General information
PDB ID 2AYG
Title CRYSTAL STRUCTURE OF HPV6A E2 DNA BINDING DOMAIN BOUND TO AN 18 BASE PAIR DNA TARGET
PDB header TRANSCRIPTION/DNA
Date 2005-09-07
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.1
Kind dna
Organism HUMAN PAPILLOMAVIRUS TYPE 6A
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2ayg.pdb AB CD 0
Biounits:
2ayg.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PPV_E2_C Domain Q84294_286-363 1.4e-24 1 No_clan A 285 361 CD  H-Bb H-Mj S-Bb 
PPV_E2_C Domain Q84294_286-363 1.4e-24 1 No_clan B 285 361 CD  H-Bb H-Mj S-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: Ferredoxin-like
    Superfamily: Viral DNA-binding domain
      Family: Viral DNA-binding domain
Papillomavirus-1 E2 protein A 281 366 CD  H-Bb H-Mj S-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: Ferredoxin-like
    Superfamily: Viral DNA-binding domain
      Family: Viral DNA-binding domain
Papillomavirus-1 E2 protein B 281 366 CD  H-Bb H-Mj S-Bb 
GO terms
Protein chains: GO type: GO description:
A/B=282-368 C host cell nucleus
A/B=282-368 F DNA binding
A/B=282-368 F DNA-binding transcription factor activity
A/B=282-368 F nucleotide binding
A/B=282-368 P DNA replication
A/B=282-368 P regulation of DNA replication
A/B=282-368 P transcription, DNA-templated
A/B=282-368 P viral DNA genome replication
Sequences
Download file with secondary structure created by Stride  
2ayg.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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