General information
PDB ID 2BBV
Title THE REFINED THREE-DIMENSIONAL STRUCTURE OF AN INSECT VIRUS AT 2.8 ANGSTROMS RESOLUTION
PDB header VIRUS/RNA
Date 1994-06-06
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind rna
Organism BLACK BEETLE VIRUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2bbv.pdb ADBECF N 0
Biounits:
2bbv.pdb1.pdb ADBECF N 60
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Peptidase_A6 Domain P04329_56-363 2.1e-99 1 CL0055 A 56 363   
Peptidase_A6 Domain P04329_56-363 2.1e-99 1 CL0055 B 56 363   
Peptidase_A6 Domain P04329_56-363 1.9e-99 1 CL0055 C 28 363 N   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein A N/A N/A -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein B N/A N/A -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein C N/A N/A N -
GO terms
Protein chains: GO type: GO description:
A/B/C=1-363, D/E/F=364-407 C T=3 icosahedral viral capsid
A/B/C=1-363, D/E/F=364-407 F metal ion binding
A/B/C=1-363, D/E/F=364-407 F aspartic-type endopeptidase activity
A/B/C=1-363, D/E/F=364-407 P proteolysis
Sequences
Download file with secondary structure created by Stride  
2bbv.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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N (rna): 
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