General information
PDB ID 2BCU
Title DNA POLYMERASE LAMBDA IN COMPLEX WITH A DNA DUPLEX CONTAINING AN UNPAIRED DAMP AND A T:T MISMATCH
PDB header TRANSFERASE, LYASE/DNA
Date 2005-10-19
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.2
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2bcu.pdb A DPT 0
Biounits:
2bcu.pdb1.pdb A DPT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B_palm Domain Q9UGP5_386-496 4.9e-35 1 CL0260 A 386 496 PT  S-Bb S-Mn L-Bb 
DNA_pol_lambd_f Domain Q9UGP5_336-384 2.7e-21 1 CL0198 A 336 384 PT  H-Bb H-Mn L-Bb 
HHH_8 Domain Q9UGP5_253-318 1e-18 1 CL0198 A 253 318 DT   
DNA_pol_B_thumb Family Q9UGP5_502-574 3e-22 1 No_clan A 502 574 PT  H-Bb H-Mj H-Mn S-Bb L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: DNA polymerase beta, N-terminal domain-like
      Family: DNA polymerase beta, N-terminal domain-like
DNA polymerase lambda A 250 327 DT  H-Bb H-Mj H-Mn L-Bb 
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: PsbU/PolX domain-like
      Family: DNA polymerase beta-like, second domain
DNA polymerase lambda A 329 385 PT -
Class: Alpha and beta proteins (a+b)
  Fold: Nucleotidyltransferase
    Superfamily: Nucleotidyltransferase
      Family: DNA polymerase beta-like
DNA polymerase lambda A 386 575 PT -
GO terms
Protein chains: GO type: GO description:
A=242-575 C nucleoplasm
A=242-575 C nucleus
A=242-575 F 5'-deoxyribose-5-phosphate lyase activity
A=242-575 F DNA binding
A=242-575 F DNA-directed DNA polymerase activity
A=242-575 F metal ion binding
A=242-575 P base-excision repair, gap-filling
A=242-575 P DNA biosynthetic process
A=242-575 P DNA replication
A=242-575 P double-strand break repair via homologous recombination
A=242-575 P double-strand break repair via nonhomologous end joining
A=242-575 P nucleotide-excision repair
A=242-575 P somatic hypermutation of immunoglobulin genes
Sequences
Download file with secondary structure created by Stride  
2bcu.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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P (dna): 
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T (dna): 
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A (protein): 
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