General information
PDB ID 2BPG
Title STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, A DNA TEMPLATE-PRIMER, AND DDCTP
PDB header TRANSFERASE/DNA
Date 1994-05-19
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.6
Kind dna
Organism RATTUS NORVEGICUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2bpg.pdb AB TPCD 0
Biounits:
2bpg.pdb1.pdb A TP 1
2bpg.pdb2.pdb B CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B_palm Domain P06766_149-262 6.4e-40 1 CL0260 A 149 262 PT  S-Bb L-Bb 
DNA_pol_lambd_f Domain P06766_98-147 9.9e-20 1 CL0198 A 98 147 P  H-Bb L-Bb 
HHH_8 Domain P06766_12-78 2.3e-18 1 CL0198 A 12 78   
DNA_pol_B_palm Domain P06766_149-262 6.4e-40 1 CL0260 B 149 262 CD  S-Bb S-Mn L-Bb 
DNA_pol_lambd_f Domain P06766_98-147 9.9e-20 1 CL0198 B 98 147 D  H-Bb L-Bb 
HHH_8 Domain P06766_12-78 2.3e-18 1 CL0198 B 12 78   
DNA_pol_B_thumb Family P06766_268-334 4.3e-17 1 No_clan A 268 334 TP  H-Bb S-Bb 
DNA_pol_B_thumb Family P06766_268-334 4.3e-17 1 No_clan B 268 334 CD  H-Bb H-Mn L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: DNA polymerase beta, N-terminal domain-like
      Family: DNA polymerase beta, N-terminal domain-like
DNA polymerase beta, N-terminal (8 kD)-domain A 9 91 -
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: DNA polymerase beta, N-terminal domain-like
      Family: DNA polymerase beta, N-terminal domain-like
DNA polymerase beta, N-terminal (8 kD)-domain B 9 91 -
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: PsbU/PolX domain-like
      Family: DNA polymerase beta-like, second domain
DNA polymerase beta A 92 148 P -
Class: Alpha and beta proteins (a+b)
  Fold: Nucleotidyltransferase
    Superfamily: Nucleotidyltransferase
      Family: DNA polymerase beta-like
DNA polymerase beta, catalytic (31 kD) fragment A 149 335 PT -
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: PsbU/PolX domain-like
      Family: DNA polymerase beta-like, second domain
DNA polymerase beta B 92 148 D -
Class: Alpha and beta proteins (a+b)
  Fold: Nucleotidyltransferase
    Superfamily: Nucleotidyltransferase
      Family: DNA polymerase beta-like
DNA polymerase beta, catalytic (31 kD) fragment B 149 335 CD -
GO terms
Protein chains: GO type: GO description:
A/B=1-335 C cytoplasm
A/B=1-335 C microtubule
A/B=1-335 C nucleus
A/B=1-335 C protein-containing complex
A/B=1-335 C spindle microtubule
A/B=1-335 F damaged DNA binding
A/B=1-335 F DNA binding
A/B=1-335 F DNA-directed DNA polymerase activity
A/B=1-335 F enzyme binding
A/B=1-335 F lyase activity
A/B=1-335 F metal ion binding
A/B=1-335 F microtubule binding
A/B=1-335 P aging
A/B=1-335 P apoptotic process
A/B=1-335 P base-excision repair
A/B=1-335 P base-excision repair, gap-filling
A/B=1-335 P cellular response to DNA damage stimulus
A/B=1-335 P DNA replication
A/B=1-335 P double-strand break repair via nonhomologous end joining
A/B=1-335 P homeostasis of number of cells
A/B=1-335 P immunoglobulin heavy chain V-D-J recombination
A/B=1-335 P in utero embryonic development
A/B=1-335 P inflammatory response
A/B=1-335 P intrinsic apoptotic signaling pathway in response to DNA damage
A/B=1-335 P lymph node development
A/B=1-335 P neuron apoptotic process
A/B=1-335 P pyrimidine dimer repair
A/B=1-335 P response to ethanol
A/B=1-335 P response to gamma radiation
A/B=1-335 P response to hyperoxia
A/B=1-335 P salivary gland morphogenesis
A/B=1-335 P somatic diversification of immunoglobulins
A/B=1-335 P somatic hypermutation of immunoglobulin genes
A/B=1-335 P spleen development
Sequences
Download file with secondary structure created by Stride  
2bpg.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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T (dna): 
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A (protein): 
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2bpg.pdb2.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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B (protein): 
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