General information
PDB ID 2D3O
Title STRUCTURE OF RIBOSOME BINDING DOMAIN OF THE TRIGGER FACTOR ON THE 50S RIBOSOMAL SUBUNIT FROM D. RADIODURANS
PDB header RIBOSOME
Date 2005-09-30
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.35
Kind rna
Organism DEINOCOCCUS RADIODURANS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2d3o.pdb RSW1 0 0
Biounits:
2d3o.pdb1.pdb RSW1 0 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Trigger_N Family Q9RT21_10-109 3.8e-23 1 No_clan 1 10 109 0   
Ribosomal_L23 Family Q9RXK0_5-90 1e-29 1 No_clan R 5 90 0   
ribosomal_L24 Family Q9RXJ1_51-114 2.6e-21 1 No_clan S 51 113 0   
KOW Family Q9RXJ1_18-49 0.000000083 1 CL0107 S 18 49 0   
Ribosomal_L29 Family Q9RXJ4_4-59 2.3e-17 1 CL0346 W 4 59 0   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal proteins S24e, L23 and L15e
    Superfamily: Ribosomal proteins S24e, L23 and L15e
      Family: L23p
Ribosomal protein L23 R 2 94 0 -
Class: All beta proteins
  Fold: SH3-like barrel
    Superfamily: Translation proteins SH3-like domain
      Family: Ribosomal proteins L24p and L21e
Ribosomal proteins L24 (L24p) S 4 113 0 -
Class: All alpha proteins
  Fold: Long alpha-hairpin
    Superfamily: Ribosomal protein L29 (L29p)
      Family: Ribosomal protein L29 (L29p)
Ribosomal protein L29 (L29p) W 1 66 0 -
GO terms
Protein chains: GO type: GO description:
1=1-112 C cytoplasm
1=1-112 F rRNA binding
1=1-112 F peptidyl-prolyl cis-trans isomerase activity
1=1-112 P protein peptidyl-prolyl isomerization
1=1-112 P protein transport
1=1-112 P cell cycle
1=1-112 P protein folding
1=1-112 P cell division
R=1-95 C ribosome
R=1-95 F nucleotide binding
R=1-95 F structural constituent of ribosome
R=1-95 P translation
Sequences
Download file with secondary structure created by Stride  
2d3o.pdb1.pdb:   [ download sequences in FASTA format ]
1 (protein): 
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R (protein): 
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S (protein): 
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W (protein): 
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0 (rna): 
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