General information
PDB ID 2D5V
Title CRYSTAL STRUCTURE OF HNF-6ALPHA DNA-BINDING DOMAIN IN COMPLEX WITH THE TTR PROMOTER
PDB header TRANSCRIPTION/DNA
Date 2005-11-07
Experimental method X-RAY DIFFRACTION
Resolution (A) 2
Kind dna
Organism RATTUS NORVEGICUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2d5v.pdb AB CDEF 0
Biounits:
2d5v.pdb1.pdb A CD 1
2d5v.pdb2.pdb B EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
CUT Domain P70512_289-366 1.4e-33 1 CL0123 A 1 78 CD  H-Bb H-Mj L-Bb L-Mj L-Mn 
Homeodomain Domain P70512_388-440 3e-10 1 CL0123 A 78 152 CD  H-Bb H-Mj L-Bb L-Mn 
CUT Domain P70512_289-366 1.4e-33 1 CL0123 B 1 78 EF  H-Bb H-Mj L-Bb L-Mj 
Homeodomain Domain P70512_388-440 3e-10 1 CL0123 B 78 152 EF  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=289-444 C nucleus
A/B=289-444 F chromatin binding
A/B=289-444 F DNA binding
A/B=289-444 F DNA-binding transcription activator activity, RNA polymerase II-specific
A/B=289-444 F DNA-binding transcription factor activity
A/B=289-444 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/B=289-444 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B=289-444 P anatomical structure morphogenesis
A/B=289-444 P B cell differentiation
A/B=289-444 P cell differentiation
A/B=289-444 P cell fate commitment
A/B=289-444 P cilium assembly
A/B=289-444 P endocrine pancreas development
A/B=289-444 P endoderm development
A/B=289-444 P epithelial cell development
A/B=289-444 P glucose metabolic process
A/B=289-444 P liver development
A/B=289-444 P negative regulation of transforming growth factor beta receptor signaling pathway
A/B=289-444 P Notch signaling pathway
A/B=289-444 P pancreas development
A/B=289-444 P positive regulation of cell migration
A/B=289-444 P positive regulation of transcription by RNA polymerase II
A/B=289-444 P regulation of cell-matrix adhesion
A/B=289-444 P regulation of transcription by RNA polymerase II
A/B=289-444 P spleen development
Sequences
Download file with secondary structure created by Stride  
2d5v.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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2d5v.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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