General information
PDB ID 2D6F
Title CRYSTAL STRUCTURE OF GLU-TRNA(GLN) AMIDOTRANSFERASE IN THE COMPLEX WITH TRNA(GLN)
PDB header LIGASE/RNA
Date 2005-11-13
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.15
Kind rna
Organism
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2d6f.pdb ABCD EF 0
Biounits:
2d6f.pdb1.pdb ABCD EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Asparaginase Domain O26802_92-287 7.4e-60 1 No_clan A 92 287   
Asparaginase Domain O26802_92-287 7.4e-60 1 No_clan B 92 287   
GatB_N Domain O26803_8-437 3e-67 1 CL0286 C 8 437 E   
GAD Domain O26803_289-381 4.7e-20 1 CL0250 C 289 381   
GatB_N Domain O26803_8-437 1.5e-67 1 CL0286 D 8 437 F   
GAD Domain O26803_289-381 5.3e-20 1 CL0250 D 289 381   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: GatD N-terminal domain-like
      Family: GatD N-terminal domain-like
Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD A 2 73 -
Class: Alpha and beta proteins (a/b)
  Fold: Glutaminase/Asparaginase
    Superfamily: Glutaminase/Asparaginase
      Family: Glutaminase/Asparaginase
Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD A 84 435 -
Class: All beta proteins
  Fold: Sm-like fold
    Superfamily: GatD N-terminal domain-like
      Family: GatD N-terminal domain-like
Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD B 2 73 -
Class: Alpha and beta proteins (a/b)
  Fold: Glutaminase/Asparaginase
    Superfamily: Glutaminase/Asparaginase
      Family: Glutaminase/Asparaginase
Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD B 86 435 -
Class: All alpha proteins
  Fold: GatB/YqeY motif
    Superfamily: GatB/YqeY motif
      Family: GatB/GatE C-terminal domain-like
Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain C 445 503 E -
Class: Alpha and beta proteins (a+b)
  Fold: DCoH-like
    Superfamily: GAD domain-like
      Family: GAD domain
Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain C 271 395 -
Class: Alpha and beta proteins (a+b)
  Fold: Glutamine synthetase/guanido kinase
    Superfamily: Glutamine synthetase/guanido kinase
      Family: GatB/GatE catalytic domain-like
Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE C 1 270 -
Class: Alpha and beta proteins (a+b)
  Fold: Glutamine synthetase/guanido kinase
    Superfamily: Glutamine synthetase/guanido kinase
      Family: GatB/GatE catalytic domain-like
Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE C 396 444 -
Class: Alpha and beta proteins (a+b)
  Fold: Glutamine synthetase/guanido kinase
    Superfamily: Glutamine synthetase/guanido kinase
      Family: GatB/GatE catalytic domain-like
Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE C 1 270 E -
Class: Alpha and beta proteins (a+b)
  Fold: Glutamine synthetase/guanido kinase
    Superfamily: Glutamine synthetase/guanido kinase
      Family: GatB/GatE catalytic domain-like
Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE C 396 444 E -
Class: All alpha proteins
  Fold: GatB/YqeY motif
    Superfamily: GatB/YqeY motif
      Family: GatB/GatE C-terminal domain-like
Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain D 445 503 F -
Class: Alpha and beta proteins (a+b)
  Fold: DCoH-like
    Superfamily: GAD domain-like
      Family: GAD domain
Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain D 271 395 -
Class: Alpha and beta proteins (a+b)
  Fold: Glutamine synthetase/guanido kinase
    Superfamily: Glutamine synthetase/guanido kinase
      Family: GatB/GatE catalytic domain-like
Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE D 1 270 F -
Class: Alpha and beta proteins (a+b)
  Fold: Glutamine synthetase/guanido kinase
    Superfamily: Glutamine synthetase/guanido kinase
      Family: GatB/GatE catalytic domain-like
Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE D 396 444 F -
Class: Alpha and beta proteins (a+b)
  Fold: Glutamine synthetase/guanido kinase
    Superfamily: Glutamine synthetase/guanido kinase
      Family: GatB/GatE catalytic domain-like
Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE D 1 270 F -
Class: Alpha and beta proteins (a+b)
  Fold: Glutamine synthetase/guanido kinase
    Superfamily: Glutamine synthetase/guanido kinase
      Family: GatB/GatE catalytic domain-like
Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE D 396 444 F -
GO terms
Protein chains: GO type: GO description:
A/B=1-435 F asparaginase activity
A/B=1-435 F ligase activity
A/B=1-435 P cellular amino acid metabolic process
A/B=1-435 P regulation of translational fidelity
C/D=1-619 C cytoplasm
C/D=1-619 F ATP binding
C/D=1-619 F carbon-nitrogen ligase activity, with glutamine as amido-N-donor
C/D=1-619 F aminoacyl-tRNA ligase activity
C/D=1-619 P translation
Sequences
Download file with secondary structure created by Stride  
2d6f.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (rna): 
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F (rna): 
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