General information
PDB ID 2DTU
Title CRYSTAL STRUCTURE OF THE BETA HAIRPIN LOOP DELETION VARIANT OF RB69 GP43 IN COMPLEX WITH DNA CONTAINING AN ABASIC SITE ANALOG
PDB header TRANSFERASE/DNA
Date 2006-07-15
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.37
Kind dna
Organism ENTEROBACTERIA PHAGE RB69
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2dtu.pdb ABCD EFGHIJKL 0
Biounits:
2dtu.pdb1.pdb A EF 1
2dtu.pdb2.pdb B GH 1
2dtu.pdb3.pdb C IJ 1
2dtu.pdb4.pdb D KL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B Family Q38087_363-784 3.8e-28 1 CL0194 A 350 791 EF  L-Bb 
DNA_pol_B_exo1 Family Q38087_19-293 1.6e-22 1 CL0219 A 19 293 F   
DNA_pol_B Family Q38087_363-784 3.8e-28 1 CL0194 B 350 791 GH  S-Bb L-Bb 
DNA_pol_B_exo1 Family Q38087_19-293 1.6e-22 1 CL0219 B 19 293 H  L-Bb 
DNA_pol_B Family Q38087_363-784 3.8e-28 1 CL0194 C 350 791 IJ  L-Bb L-Mn 
DNA_pol_B_exo1 Family Q38087_19-293 1.5e-22 1 CL0219 C 19 293 J  L-Bb 
DNA_pol_B Family Q38087_363-784 3.8e-28 1 CL0194 D 350 791 KL  S-Bb 
DNA_pol_B_exo1 Family Q38087_19-293 1.5e-22 1 CL0219 D 19 293 LK   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-902 F nucleotide binding
A/B/C/D=1-902 F DNA-directed DNA polymerase activity
A/B/C/D=1-902 F exonuclease activity
A/B/C/D=1-902 F DNA binding
A/B/C/D=1-902 P nucleic acid phosphodiester bond hydrolysis
A/B/C/D=1-902 P DNA replication
Sequences
Download file with secondary structure created by Stride  
2dtu.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
F (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
2dtu.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
Click "SHOW" for view sequence
H (dna): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
2dtu.pdb3.pdb:   [ download sequences in FASTA format ]
I (dna): 
Click "SHOW" for view sequence
J (dna): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
2dtu.pdb4.pdb:   [ download sequences in FASTA format ]
K (dna): 
Click "SHOW" for view sequence
L (dna): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text