General information
PDB ID 2FD8
Title CRYSTAL STRUCTURE OF ALKB IN COMPLEX WITH FE(II), 2-OXOGLUTARATE, AND METHYLATED TRINUCLEOTIDE T-MEA-T
PDB header OXIDOREDUCTASE/DNA
Date 2005-12-13
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.3
Kind dna
Organism ESCHERICHIA COLI K12
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2fd8.pdb A B 0
Biounits:
2fd8.pdb1.pdb A B 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
2OG-FeII_Oxy_2 Domain 3.8e-56 1 CL0029 A 18 210 B
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: Clavaminate synthase-like
      Family: AlkB-like
Alkylated DNA repair protein AlkB A 15 214 B -
GO terms
Protein chains: GO type: GO description:
A=12-216 F ferrous iron binding
A=12-216 F oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
A=12-216 F cytosine C-5 DNA demethylase activity
A=12-216 F DNA-N1-methyladenine dioxygenase activity
A=12-216 F oxidative RNA demethylase activity
A=12-216 P RNA repair
A=12-216 P oxidative single-stranded DNA demethylation
A=12-216 P DNA dealkylation involved in DNA repair
A=12-216 P oxidative single-stranded RNA demethylation
Sequences
Download file with secondary structure created by Stride  
2fd8.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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A (protein): 
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