General information
PDB ID 2FDC
Title STRUCTURAL BASIS OF DNA DAMAGE RECOGNITION AND PROCESSING BY UVRB: CRYSTAL STRUCTURE OF A UVRB/DNA COMPLEX
PDB header DNA BINDING PROTEIN/DNA
Date 2005-12-13
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.3
Kind dna
Organism BACILLUS CALDOTENAX
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2fdc.pdb AB CD 0
Biounits:
2fdc.pdb1.pdb A D 1
2fdc.pdb2.pdb B C 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
UvrB Family P56981_551-593 2.2e-22 1 CL0023 A 551 593   
Helicase_C Family P56981_429-545 4.9e-16 1 CL0023 A 429 545   
ResIII Family P56981_12-141 0.00000000052 1 CL0023 A 10 397 D   
UvrB Family P56981_551-593 2.7e-22 1 CL0023 B 551 593   
Helicase_C Family P56981_429-545 0.000000000000042 1 CL0023 B 429 545 C   
ResIII Family P56981_12-141 0.0000000015 1 CL0023 B 11 140 C   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Nucleotide excision repair enzyme UvrB A 2 414 D -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Nucleotide excision repair enzyme UvrB A 415 594 -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Nucleotide excision repair enzyme UvrB B 2 414 C -
Class: Alpha and beta proteins (a/b)
  Fold: P-loop containing nucleoside triphosphate hydrolases
    Superfamily: P-loop containing nucleoside triphosphate hydrolases
      Family: Tandem AAA-ATPase domain
Nucleotide excision repair enzyme UvrB B 415 593 C -
GO terms
Protein chains: GO type: GO description:
A/B=2-657 C cytoplasm
A/B=2-657 F DNA binding
A/B=2-657 F helicase activity
A/B=2-657 F ATP binding
A/B=2-657 F excinuclease ABC activity
A/B=2-657 P nucleotide-excision repair
A/B=2-657 P SOS response
A/B=2-657 P nucleic acid phosphodiester bond hydrolysis
Sequences
Download file with secondary structure created by Stride  
2fdc.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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A (protein): 
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2fdc.pdb2.pdb:   [ download sequences in FASTA format ]
C (dna): 
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B (protein): 
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