General information
PDB ID 2GM4
Title AN ACTIVATED, TETRAMERIC GAMMA-DELTA RESOLVASE: HIN CHIMAERA BOUND TO CLEAVED DNA
PDB header RECOMBINATION, DNA
Date 2006-04-05
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.5
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2gm4.pdb AB XZYJIK 0
Biounits:
2gm4.pdb1.pdb ABLM XZYJIKCDEFGH 0
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Resolvase Domain P03012_3-139 7.4e-37 1 No_clan A 3 139 XZ   
HTH_7 Domain P03012_141-182 8.3e-09 1 CL0123 A 141 182 XY  H-Bb H-Mj L-Bb L-Mj 
Resolvase Domain P03012_3-139 7.3e-37 1 No_clan B 3 139 IJ   
HTH_7 Domain P03012_141-182 8.2e-09 1 CL0123 B 141 182 JK  H-Bb H-Mj L-Bb L-Mj L-Mn 
Resolvase Domain 7.4e-37 1 No_clan L 3 139 CD
HTH_7 Domain 8.3e-09 1 CL0123 L 141 182 CE
Resolvase Domain 7.3e-37 1 No_clan M 3 139 GF
HTH_7 Domain 8.2e-09 1 CL0123 M 141 182 FH
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Recombinase DNA-binding domain
gamma,delta resolvase (C-terminal domain) A 141 183 XY  H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Recombinase DNA-binding domain
gamma,delta resolvase (C-terminal domain) B 141 183 JK  H-Bb H-Mj L-Bb L-Mn 
Class: Alpha and beta proteins (a/b)
  Fold: Resolvase-like
    Superfamily: Resolvase-like
      Family: gamma,delta resolvase, catalytic domain
gamma,delta resolvase, catalytic domain A 1 140 XZ -
Class: Alpha and beta proteins (a/b)
  Fold: Resolvase-like
    Superfamily: Resolvase-like
      Family: gamma,delta resolvase, catalytic domain
gamma,delta resolvase, catalytic domain B 2 140 IJK -
GO terms
Protein chains: GO type: GO description:
A/B=3-183 F recombinase activity
A/B=3-183 F DNA binding
A/B=3-183 P DNA integration
A/B=3-183 P DNA recombination
Sequences
Download file with secondary structure created by Stride  
2gm4.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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E (dna): 
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F (dna): 
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G (dna): 
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H (dna): 
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I (dna): 
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J (dna): 
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K (dna): 
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X (dna): 
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Y (dna): 
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Z (dna): 
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A (protein): 
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B (protein): 
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L (protein): 
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M (protein): 
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