General information
PDB ID 2GZK
Title STRUCTURE OF A COMPLEX OF TANDEM HMG BOXES AND DNA
PDB header DNA/STRUCTURAL PROTEIN
Date 2006-05-11
Experimental method SOLUTION NMR
Resolution (A) N/A
Kind dna
Organism HOMO SAPIENS, RATTUS RATTUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2gzk.pdb A BC 0
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HMG_box Domain P63159_95-163 1.4e-27 1 CL0114 A 89 157 BC  H-Bb H-Mj H-Mn L-Bb L-Mn 
HMG_box Domain Q05066_60-128 3.7e-26 1 CL0114 A 5 73 BC  H-Bb H-Mj H-Mn L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: HMG-box
    Superfamily: HMG-box
      Family: HMG-box
High mobility group protein 1, HMG1 A 87 159 BC  H-Bb H-Mn L-Bb L-Mn 
Class: All alpha proteins
  Fold: HMG-box
    Superfamily: HMG-box
      Family: HMG-box
SRY A 3 75 BC  H-Bb H-Mn L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A=56-130 C nucleus
A=56-130 C cytoplasm
A=56-130 C nuclear speck
A=56-130 F DNA binding
A=56-130 F RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
A=56-130 P male sex determination
A=56-130 P positive regulation of transcription, DNA-dependent
A=56-130 P sex differentiation
A=56-130 P cell differentiation
A=56-130 P positive regulation of male gonad development
A=82-165 C extracellular space
A=82-165 C chromosome
A=82-165 F DNA binding, bending
A=82-165 F open form four-way junction DNA binding
A=82-165 F bent DNA binding
A=82-165 F double-stranded DNA binding
A=82-165 F crossed form four-way junction DNA binding
A=82-165 F glycolipid binding
A=82-165 F 5S rRNA binding
A=82-165 F peptide binding
A=82-165 F single-stranded DNA binding
A=82-165 F heparin binding
A=82-165 P neuron projection development
A=82-165 P cellular response to interleukin-1
A=82-165 P response to lipopolysaccharide
A=82-165 P regulation of inflammatory response
A=82-165 P circadian rhythm
A=82-165 P positive regulation of smooth muscle cell migration
A=82-165 P positive regulation of mitotic cell cycle
A=82-165 P response to glucose stimulus
A=82-165 P cell morphogenesis
A=82-165 P response to drug
A=82-165 P chemotaxis
A=82-165 P response to heat
A=82-165 P DNA geometric change
A=82-165 P response to insulin stimulus
A=82-165 P positive regulation of myoblast differentiation
A=82-165 P myoblast proliferation
A=82-165 P positive regulation of myeloid cell apoptotic process
A=82-165 P negative regulation of DNA replication
A=82-165 P actin cytoskeleton reorganization
A=82-165 P response to interferon-gamma
A=82-165 P positive regulation of mesenchymal cell proliferation
A=82-165 P male-specific defense response to bacterium
A=82-165 P induction of positive chemotaxis
A=82-165 P positive regulation of neuron projection development
Sequences
Download file with secondary structure created by Stride  
pdb2gzk.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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