General information
PDB ID 2H1O
Title STRUCTURE OF FITAB BOUND TO IR36 DNA FRAGMENT
PDB header GENE REGULATION/DNA COMPLEX
Date 2006-05-16
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind dna
Organism NEISSERIA GONORRHOEAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2h1o.pdb ABCDEFGH UV 0
Biounits:
2h1o.pdb1.pdb ABCDEFGH UV 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PIN Domain Q5F882_2-132 1.7e-19 1 CL0280 A 2 132   
PIN Domain Q5F882_2-132 1.7e-19 1 CL0280 A 2 132   
PIN Domain Q5F882_2-132 1.7e-19 1 CL0280 A 2 132   
PIN Domain Q5F882_2-132 1.7e-19 1 CL0280 A 2 132   
PIN Domain Q5F882_2-132 1.6e-19 1 CL0280 B 2 132   
PIN Domain Q5F882_2-132 1.6e-19 1 CL0280 B 2 132   
PIN Domain Q5F882_2-132 1.6e-19 1 CL0280 B 2 132   
PIN Domain Q5F882_2-132 1.6e-19 1 CL0280 B 2 132   
PIN Domain Q5F882_2-132 1.7e-19 1 CL0280 C 2 132   
PIN Domain Q5F882_2-132 1.7e-19 1 CL0280 C 2 132   
PIN Domain Q5F882_2-132 1.7e-19 1 CL0280 C 2 132   
PIN Domain Q5F882_2-132 1.7e-19 1 CL0280 C 2 132   
PIN Domain Q5F882_2-132 1.6e-19 1 CL0280 D 2 132   
PIN Domain Q5F882_2-132 1.6e-19 1 CL0280 D 2 132   
PIN Domain Q5F882_2-132 1.6e-19 1 CL0280 D 2 132   
PIN Domain Q5F882_2-132 1.6e-19 1 CL0280 D 2 132   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: PIN domain-like
    Superfamily: PIN domain-like
      Family: PIN domain
Trafficking protein B A 1 138 -
Class: Alpha and beta proteins (a/b)
  Fold: PIN domain-like
    Superfamily: PIN domain-like
      Family: PIN domain
Trafficking protein B B 1 138 -
Class: Alpha and beta proteins (a/b)
  Fold: PIN domain-like
    Superfamily: PIN domain-like
      Family: PIN domain
Trafficking protein B C 1 138 -
Class: Alpha and beta proteins (a/b)
  Fold: PIN domain-like
    Superfamily: PIN domain-like
      Family: PIN domain
Trafficking protein B D 1 138 -
Class: All alpha proteins
  Fold: Ribbon-helix-helix
    Superfamily: Ribbon-helix-helix
      Family: Trafficking protein A-like
Trafficking protein A E 2 69 UV  H-Bb S-Bb S-Mj L-Mj 
Class: All alpha proteins
  Fold: Ribbon-helix-helix
    Superfamily: Ribbon-helix-helix
      Family: Trafficking protein A-like
Trafficking protein A F 2 65 UV  H-Bb S-Bb S-Mj L-Bb L-Mj 
Class: All alpha proteins
  Fold: Ribbon-helix-helix
    Superfamily: Ribbon-helix-helix
      Family: Trafficking protein A-like
Trafficking protein A G 2 68 UV  H-Bb S-Mj L-Bb L-Mj 
Class: All alpha proteins
  Fold: Ribbon-helix-helix
    Superfamily: Ribbon-helix-helix
      Family: Trafficking protein A-like
Trafficking protein A H 2 64 UV  H-Bb S-Bb S-Mj L-Bb L-Mj 
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-138 F metal ion binding
A/B/C/D=1-138 F ribonuclease activity
A/B/C/D=1-138 F DNA binding
A/B/C/D=1-138 P nucleic acid phosphodiester bond hydrolysis
A/B/C/D=1-138 P migration in host
E/F/G/H=2-69 F sequence-specific DNA binding
E/F/G/H=2-69 P regulation of transcription, DNA-dependent
Sequences
Download file with secondary structure created by Stride  
2h1o.pdb1.pdb:   [ download sequences in FASTA format ]
U (dna): 
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V (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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