General information
PDB ID 2I13
Title AART, A SIX FINGER ZINC FINGER DESIGNED TO RECOGNIZE ANN TRIPLETS
PDB header DNA BINDING PROTEIN/DNA
Date 2006-08-12
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.96
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2i13.pdb AB CDEF 0
Biounits:
2i13.pdb1.pdb A CD 1
2i13.pdb2.pdb B EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-H2C2_2 Domain Q07230_249-274 1.1e-11 1 CL0361 A 64 89 CD  H-Bb H-Mj L-Bb L-Mj 
zf-H2C2_2 Domain Q07230_277-302 4e-11 1 CL0361 A 92 117 CD  H-Bb H-Mj S-Bb L-Bb L-Mj 
zf-H2C2_2 Domain Q07230_305-330 9.1e-11 1 CL0361 A 120 145 C  H-Bb H-Mj L-Bb L-Mj 
zf-H2C2_2 Domain Q07230_333-358 3.3e-09 0 CL0361 A 148 173 CD  H-Bb H-Mj S-Bb L-Mj 
Zn-ribbon_8 Domain Q07230_262-304 0.00011 0 CL0167 A 77 119 CD  H-Bb H-Mj S-Bb L-Bb L-Mj 
zf-H2C2_2 Domain Q07230_221-246 0.00011 0 CL0361 A 33 61 CD  H-Bb H-Mj S-Bb L-Mj 
Zn-ribbon_8 Domain Q07230_318-361 0.00034 0 CL0167 A 133 176 CD  H-Bb H-Mj S-Bb L-Bb L-Mj 
zf-H2C2_2 Domain Q07230_263-288 9.9e-12 1 CL0361 B 64 89 EF  H-Bb H-Mj S-Bb L-Bb L-Mj 
zf-H2C2_2 Domain Q07230_291-316 3.7e-11 1 CL0361 B 92 117 EF  H-Bb H-Mj L-Bb L-Mj 
zf-H2C2_2 Domain Q07230_319-344 8.5e-11 1 CL0361 B 120 145 E  H-Bb H-Mj H-Mn S-Bb L-Mj 
zf-H2C2_2 Domain Q07230_235-260 5.6e-10 0 CL0361 B 36 61 E  H-Bb H-Mj S-Bb 
Zn-ribbon_8 Domain Q07230_276-318 9.9e-05 0 CL0167 B 77 119 EF  H-Bb H-Mj S-Bb L-Bb L-Mj 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Designed proteins
  Fold: Zinc finger design
    Superfamily: Zinc finger design
      Family: Zinc finger design
AART, designed six-finger protein A 31 184 CD  H-Bb H-Mj L-Bb L-Mj 
Class: Designed proteins
  Fold: Zinc finger design
    Superfamily: Zinc finger design
      Family: Zinc finger design
AART, designed six-finger protein B 31 178 EF  H-Bb H-Mj L-Bb L-Mj 
GO terms
Protein chains: GO type: GO description:
A/B=218-388 C nucleus
A/B=218-388 F DNA binding
A/B=218-388 F metal ion binding
A/B=218-388 P cell differentiation
A/B=218-388 P multicellular organism development
A/B=218-388 P regulation of gene expression
A/B=218-388 P spermatogenesis
Sequences
Download file with secondary structure created by Stride  
2i13.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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2i13.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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