General information
PDB ID 2IBK
Title BYPASS OF MAJOR BENZOPYRENE-DG ADDUCT BY Y-FAMILY DNA POLYMERASE WITH UNIQUE STRUCTURAL GAP
PDB header TRANSFERASE/DNA
Date 2006-09-11
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.25
Kind dna
Organism SULFOLOBUS SOLFATARICUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2ibk.pdb A DE 0
Biounits:
2ibk.pdb1.pdb A DE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
IMS Family Q97W02_6-156 4.6e-45 1 No_clan A 6 156 ED   
IMS_HHH Motif Q97W02_168-199 0.0000003 1 CL0198 A 168 199 D  H-Bb L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: Lesion bypass DNA polymerase (Y-family), little finger domain
    Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain
      Family: Lesion bypass DNA polymerase (Y-family), little finger domain
DinB homolog (DBH) A 241 341 DE -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: Lesion bypass DNA polymerase (Y-family), catalytic domain
DinB homolog (DBH) A 1 240 DE -
GO terms
Protein chains: GO type: GO description:
A=1-352 C cytoplasm
A=1-352 F damaged DNA binding
A=1-352 F metal ion binding
A=1-352 F DNA-directed DNA polymerase activity
A=1-352 P DNA replication
A=1-352 P DNA repair
Sequences
Download file with secondary structure created by Stride  
2ibk.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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A (protein): 
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