General information
PDB ID 2IHM
Title POLYMERASE MU IN TERNARY COMPLEX WITH GAPPED 11MER DNA DUPLEX AND BOUND INCOMING NUCLEOTIDE
PDB header TRANSFERASE/DNA
Date 2006-09-26
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.4
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2ihm.pdb AB TPDUQE 0
Biounits:
2ihm.pdb1.pdb A TPD 1
2ihm.pdb2.pdb B UQE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_lambd_f Domain Q9JIW4_238-287 2.1e-20 1 CL0198 A 238 287 PT  H-Bb L-Bb 
HHH_8 Domain Q9JIW4_153-218 4.9e-11 1 CL0198 A 153 218 DT   
DNA_pol_B_palm Domain Q9JIW4_289-365 1.8e-10 1 CL0260 A 289 426 PT  S-Bb L-Bb 
DNA_pol_lambd_f Domain Q9JIW4_238-287 2.2e-20 1 CL0198 B 238 287 Q  H-Bb L-Bb 
HHH_8 Domain Q9JIW4_153-218 5e-11 1 CL0198 B 153 218 EU   
DNA_pol_B_palm Domain Q9JIW4_289-365 8.8e-10 1 CL0260 B 289 426 QU  S-Bb L-Bb 
DNA_pol_B_thumb Family Q9JIW4_432-495 1e-20 1 No_clan A 432 495 TP  H-Bb H-Mn 
DNA_pol_B_thumb Family Q9JIW4_432-495 1e-20 1 No_clan B 432 495 UQ  H-Bb S-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=137-496 C nucleus
A/B=137-496 F DNA binding
A/B=137-496 F DNA-directed DNA polymerase activity
A/B=137-496 F metal ion binding
A/B=137-496 P B cell differentiation
A/B=137-496 P DNA recombination
A/B=137-496 P double-strand break repair via nonhomologous end joining
A/B=137-496 P somatic hypermutation of immunoglobulin genes
Sequences
Download file with secondary structure created by Stride  
2ihm.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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P (dna): 
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T (dna): 
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A (protein): 
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2ihm.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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Q (dna): 
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U (dna): 
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B (protein): 
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