General information
PDB ID 2IVK
Title CRYSTAL STRUCTURE OF THE PERIPLASMIC ENDONUCLEASE VVN COMPLEXED WITH A 16-BP DNA
PDB header HYDROLASE
Date 2006-06-14
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.9
Kind dna
Organism VIBRIO VULNIFICUS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2ivk.pdb ABCD EFGHIJ 0
Biounits:
2ivk.pdb1.pdb ABCD EFGHIJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Endonuclease_1 Family Q7MHK3_23-228 6.2e-43 1 CL0263 A 23 228 EF  H-Bb L-Bb 
Endonuclease_1 Family Q7MHK3_23-228 6.3e-43 1 CL0263 B 23 228 EFIJ  H-Bb H-Mn L-Bb 
Endonuclease_1 Family Q7MHK3_23-228 6.3e-43 1 CL0263 C 23 228 GHIJ   
Endonuclease_1 Family Q7MHK3_23-228 6.2e-43 1 CL0263 D 23 228 GH   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: His-Me finger endonucleases
    Superfamily: His-Me finger endonucleases
      Family: Endonuclease I
Periplasmic endonuclease Vvn A 19 229 EF -
Class: Alpha and beta proteins (a+b)
  Fold: His-Me finger endonucleases
    Superfamily: His-Me finger endonucleases
      Family: Endonuclease I
Periplasmic endonuclease Vvn B 19 229 EFIJ -
Class: Alpha and beta proteins (a+b)
  Fold: His-Me finger endonucleases
    Superfamily: His-Me finger endonucleases
      Family: Endonuclease I
Periplasmic endonuclease Vvn C 19 229 GHIJ -
Class: Alpha and beta proteins (a+b)
  Fold: His-Me finger endonucleases
    Superfamily: His-Me finger endonucleases
      Family: Endonuclease I
Periplasmic endonuclease Vvn D 19 229 GH -
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
2ivk.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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G (dna): 
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H (dna): 
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I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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