General information
PDB ID 2IY5
Title PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNA AND A PHENYLALANYL-ADENYLATE ANALOG
PDB header LIGASE
Date 2006-07-12
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.1
Kind rna
Organism THERMUS THERMOPHILUS
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CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA WebPDA
EDS PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2iy5.pdb AB T 0
Biounits:
2iy5.pdb1.pdb ABCD TE 0
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
tRNA-synt_2d Domain 1.3e-97 1 CL0040 A 85 346 E
Phe_tRNA-synt_N Domain 5.7e-19 1 CL0298 A 15 81 T
B3_4 Domain 1.2e-60 1 CL0383 B 209 385 E
FDX-ACB Domain 4e-25 1 No_clan B 688 780 T
B5 Domain 1.1e-19 1 No_clan B 404 469
tRNA_bind Domain 0.00000044 1 CL0021 B 45 145
tRNA-synt_2d Domain 0.0000022 1 CL0040 B 484 671 E
tRNA-synt_2d Domain 1.3e-97 1 CL0040 C 85 346 T
Phe_tRNA-synt_N Domain 5.7e-19 1 CL0298 C 15 81 E
B3_4 Domain 1.2e-60 1 CL0383 D 209 385 T
FDX-ACB Domain 4e-25 1 No_clan D 688 780 E
B5 Domain 1.1e-19 1 No_clan D 404 469
tRNA_bind Domain 0.00000044 1 CL0021 D 45 145
tRNA-synt_2d Domain 0.0000022 1 CL0040 D 484 671 T
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Long alpha-hairpin
    Superfamily: tRNA-binding arm
      Family: Phenylalanyl-tRNA synthetase (PheRS)
Phenylalanyl-tRNA synthetase (PheRS) A 15 84 T -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS A 85 350 E -
Class: All alpha proteins
  Fold: Putative DNA-binding domain
    Superfamily: Putative DNA-binding domain
      Family: Domains B1 and B5 of PheRS-beta, PheT
Domains B1 and B5 of PheRS-beta, PheT B 1 38 E -
Class: All alpha proteins
  Fold: Putative DNA-binding domain
    Superfamily: Putative DNA-binding domain
      Family: Domains B1 and B5 of PheRS-beta, PheT
Domains B1 and B5 of PheRS-beta, PheT B 152 190 E -
Class: All alpha proteins
  Fold: Putative DNA-binding domain
    Superfamily: Putative DNA-binding domain
      Family: Domains B1 and B5 of PheRS-beta, PheT
Domains B1 and B5 of PheRS-beta, PheT B 1 38 E -
Class: All alpha proteins
  Fold: Putative DNA-binding domain
    Superfamily: Putative DNA-binding domain
      Family: Domains B1 and B5 of PheRS-beta, PheT
Domains B1 and B5 of PheRS-beta, PheT B 152 190 E -
Class: All alpha proteins
  Fold: Putative DNA-binding domain
    Superfamily: Putative DNA-binding domain
      Family: Domains B1 and B5 of PheRS-beta, PheT
Domains B1 and B5 of PheRS-beta, PheT B 400 474 -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Myf domain
Domain B2 of PheRS-beta, PheT B 39 151 -
Class: All beta proteins
  Fold: PheT/TilS domain
    Superfamily: PheT/TilS domain
      Family: B3/B4 domain of PheRS, PheT
B3/B4 domain of PheRS, PheT B 191 399 E -
Class: Alpha and beta proteins (a+b)
  Fold: Ferredoxin-like
    Superfamily: Anticodon-binding domain of PheRS
      Family: Anticodon-binding domain of PheRS
Phenylalanyl-tRNA synthetase B 682 781 T -
Class: Alpha and beta proteins (a+b)
  Fold: Class II aaRS and biotin synthetases
    Superfamily: Class II aaRS and biotin synthetases
      Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain B 475 681 E -
GO terms
Protein chains: GO type: GO description:
A=1-350 F metal ion binding
B=1-785 C cytoplasm
B=1-785 F magnesium ion binding
B=1-785 F phenylalanine-tRNA ligase activity
B=1-785 F ATP binding
B=1-785 F tRNA binding
B=1-785 P tRNA processing
B=1-785 P phenylalanyl-tRNA aminoacylation
Sequences
Download file with secondary structure created by Stride  
2iy5.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (rna): 
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T (rna): 
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