General information
PDB ID 2J6U
Title TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DGTP.
PDB header TRANSFERASE/DNA
Date 2006-10-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.5
Kind dna
Organism SULFOLOBUS SOLFATARICUS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2j6u.pdb A PT 0
Biounits:
2j6u.pdb1.pdb A PT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
IMS Family Q97W02_6-156 4.7e-45 1 No_clan A 9 159 PT   
IMS_HHH Motif Q97W02_168-199 0.00000031 1 CL0198 A 171 202 P  H-Bb L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: Lesion bypass DNA polymerase (Y-family), little finger domain
    Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain
      Family: Lesion bypass DNA polymerase (Y-family), little finger domain
DinB homolog (DBH) A 244 344 PT -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: Lesion bypass DNA polymerase (Y-family), catalytic domain
DinB homolog (DBH) A 5 243 PT -
GO terms
Protein chains: GO type: GO description:
A=1-352 C cytoplasm
A=1-352 F damaged DNA binding
A=1-352 F DNA-directed DNA polymerase activity
A=1-352 F metal ion binding
A=1-352 P DNA repair
A=1-352 P DNA replication
Sequences
Download file with secondary structure created by Stride  
2j6u.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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T (dna): 
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A (protein): 
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