General information
PDB ID 2JEA
Title STRUCTURE OF A 9-SUBUNIT ARCHAEAL EXOSOME BOUND TO RNA
PDB header HYDROLASE/RNA
Date 2007-01-16
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.33
Kind rna
Organism SULFOLOBUS SOLFATARICUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2jea.pdb ABI C 0
Biounits:
2jea.pdb1.pdb ABIDEGHJL CFK 0
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNase_PH Domain Q9UXC0_36-171 3.7e-28 1 CL0329 A 36 171 CF   
RNase_PH_C Domain Q9UXC0_195-261 7e-11 1 No_clan A 195 261   
RNase_PH Domain Q9UXC2_27-156 2e-34 1 CL0329 B 27 156 CF   
RNase_PH_C Domain Q9UXC2_159-224 3.5e-13 1 No_clan B 159 224 C   
RNase_PH Domain 3.7e-28 1 CL0329 D 36 171 FK
RNase_PH_C Domain 7e-11 1 No_clan D 195 261
RNase_PH Domain 2e-34 1 CL0329 E 27 156 FK
RNase_PH_C Domain 3.5e-13 1 No_clan E 159 224 F
S1 Domain 0.00076 0 CL0021 G 69 144
RNase_PH Domain 3.7e-28 1 CL0329 H 36 171 KC
RNase_PH_C Domain 7e-11 1 No_clan H 195 261
S1 Domain 0.00076 0 CL0021 I 69 144
RNase_PH Domain 2e-34 1 CL0329 J 27 156 CK
RNase_PH_C Domain 3.5e-13 1 No_clan J 159 224 K
S1 Domain 0.00076 0 CL0021 L 69 144
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein S5 domain 2-like
    Superfamily: Ribosomal protein S5 domain 2-like
      Family: Ribonuclease PH domain 1-like
Exosome complex exonuclease 2,ECX2 A 1 191 CF -
Class: Alpha and beta proteins (a+b)
  Fold: Ribonuclease PH domain 2-like
    Superfamily: Ribonuclease PH domain 2-like
      Family: Ribonuclease PH domain 2-like
Exosome complex exonuclease 2, ECX2 A 192 275 -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein S5 domain 2-like
    Superfamily: Ribosomal protein S5 domain 2-like
      Family: Ribonuclease PH domain 1-like
Exosome complex exonuclease 1, ECX1 B 8 155 CF -
Class: Alpha and beta proteins (a+b)
  Fold: Ribonuclease PH domain 2-like
    Superfamily: Ribonuclease PH domain 2-like
      Family: Ribonuclease PH domain 2-like
Exosome complex exonuclease 1, ECX1 B 156 241 C -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Cold shock DNA-binding domain-like
S1-domain of exosome complex RNA-binding protein 1, ECR1 I 66 152 -
Class: All beta proteins
  Fold: Barrel-sandwich hybrid
    Superfamily: Ribosomal L27 protein-like
      Family: ECR1 N-terminal domain-like
Exosome complex RNA-binding protein 1, ECR1 I 7 65 -
Class: Alpha and beta proteins (a+b)
  Fold: Eukaryotic type KH-domain (KH-domain type I)
    Superfamily: Eukaryotic type KH-domain (KH-domain type I)
      Family: Eukaryotic type KH-domain (KH-domain type I)
Exosome complex RNA-binding protein 1, ECR1 I 153 221 -
GO terms
Protein chains: GO type: GO description:
A=1-275 F 3'-5' exonuclease activity
A=1-275 P RNA catabolic process
B=1-248 C exosome (RNase complex)
B=1-248 C cytoplasm
B=1-248 F exoribonuclease activity, producing 5'-phosphomonoesters
B=1-248 P nucleic acid phosphodiester bond hydrolysis
I=1-249 F RNA binding
Sequences
Download file with secondary structure created by Stride  
2jea.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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D (protein): 
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E (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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L (protein): 
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C (rna): 
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F (rna): 
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K (rna): 
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