General information
PDB ID 2LD5
Title SOLUTION NMR-DERIVED COMPLEX STRUCTURE OF HOXA13 DNA BINDING DOMAIN BOUND TO DNA
PDB header TRANSCRIPTION/DNA
Date 2011-05-14
Experimental method SOLUTION NMR
Resolution (A) N/A
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2ld5.pdb A BC 10
Biounits:
2ld5.pdb1.pdb A BC 1
NMR models:
2ld5.MDL1.pdb A BC 1
2ld5.MDL2.pdb A BC 1
2ld5.MDL3.pdb A BC 1
2ld5.MDL4.pdb A BC 1
2ld5.MDL5.pdb A BC 1
2ld5.MDL6.pdb A BC 1
2ld5.MDL7.pdb A BC 1
2ld5.MDL8.pdb A BC 1
2ld5.MDL9.pdb A BC 1
2ld5.MDL10.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Homeodomain Domain Q62424_321-377 1.2e-19 1 CL0123 A 8 64 BC  H-Bb H-Mj L-Bb L-Mj L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=320-386 C cytosol
A=320-386 C intermediate filament cytoskeleton
A=320-386 C nucleoplasm
A=320-386 C nucleus
A=320-386 F cis-regulatory region sequence-specific DNA binding
A=320-386 F DNA binding
A=320-386 F DNA-binding transcription activator activity, RNA polymerase II-specific
A=320-386 F DNA-binding transcription factor activity
A=320-386 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A=320-386 F sequence-specific DNA binding
A=320-386 F sequence-specific double-stranded DNA binding
A=320-386 F transcription regulatory region sequence-specific DNA binding
A=320-386 P anatomical structure morphogenesis
A=320-386 P animal organ morphogenesis
A=320-386 P artery morphogenesis
A=320-386 P branching involved in prostate gland morphogenesis
A=320-386 P embryonic forelimb morphogenesis
A=320-386 P endothelial cell fate specification
A=320-386 P endothelial cell morphogenesis
A=320-386 P inner ear development
A=320-386 P male genitalia development
A=320-386 P positive regulation of mesenchymal cell apoptotic process
A=320-386 P positive regulation of mitotic nuclear division
A=320-386 P positive regulation of transcription by RNA polymerase II
A=320-386 P regulation of BMP signaling pathway
A=320-386 P tissue homeostasis
A=320-386 P vasculogenesis
A=320-386 P ventricular septum development
Sequences
Download file with secondary structure created by Stride  
2ld5.MDL1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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