General information
PDB ID 2OQ4
Title CRYSTAL STRUCTURE OF THE DNA REPAIR ENZYME ENDONUCLEASE- VIII (NEI) FROM E. COLI (E2Q) IN COMPLEX WITH AP-SITE CONTAINING DNA SUBSTRATE
PDB header HYDROLASE/DNA
Date 2007-01-31
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.6
Kind dna
Organism ESCHERICHIA COLI
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2oq4.pdb AB CDEF 0
Biounits:
2oq4.pdb1.pdb A CD 1
2oq4.pdb2.pdb B EF 1
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
H2TH Domain 0.00000000014 1 CL0303 A 125 210 D
Fapy_DNA_glyco Domain 0.0000000041 1 No_clan A 1 106 CD
zf-FPG_IleRS Domain 0.000000023 1 CL0167 A 234 262 CD
H2TH Domain 0.00000000013 1 CL0303 B 125 223 F
Fapy_DNA_glyco Domain 0.000000004 1 No_clan B 1 106 EF
zf-FPG_IleRS Domain 0.00022 1 CL0167 B 234 262 FE
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Middle domain of MutM-like DNA repair proteins
Endonuclease VIII A 125 213 D  L-Bb 
Class: All beta proteins
  Fold: N-terminal domain of MutM-like DNA repair proteins
    Superfamily: N-terminal domain of MutM-like DNA repair proteins
      Family: N-terminal domain of MutM-like DNA repair proteins
Endonuclease VIII A 1 124 CD  S-Bb L-Bb L-Mj L-Mn 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
Endonuclease VIII A 224 262 CD  S-Mj L-Bb 
Class: All alpha proteins
  Fold: S13-like H2TH domain
    Superfamily: S13-like H2TH domain
      Family: Middle domain of MutM-like DNA repair proteins
Endonuclease VIII B 125 212 F -
Class: All beta proteins
  Fold: N-terminal domain of MutM-like DNA repair proteins
    Superfamily: N-terminal domain of MutM-like DNA repair proteins
      Family: N-terminal domain of MutM-like DNA repair proteins
Endonuclease VIII B 1 124 EF  S-Bb L-Bb L-Mn 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
Endonuclease VIII B 224 262 FE  L-Bb 
GO terms
Protein chains: GO type: GO description:
A/B=4-263 F endonuclease activity
A/B=4-263 F hydrolase activity, hydrolyzing N-glycosyl compounds
A/B=4-263 F damaged DNA binding
A/B=4-263 F zinc ion binding
A/B=4-263 F DNA-(apurinic or apyrimidinic site) lyase activity
A/B=4-263 P nucleotide-excision repair
A/B=4-263 P base-excision repair
Sequences
Download file with secondary structure created by Stride  
2oq4.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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2oq4.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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