General information
PDB ID 2OXM
Title CRYSTAL STRUCTURE OF A UNG2/MODIFIED DNA COMPLEX THAT REPRESENT A STABILIZED SHORT-LIVED EXTRAHELICAL STATE IN EZYMATIC DNA BASE FLIPPING
PDB header HYDROLASE/DNA
Date 2007-02-20
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.5
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2oxm.pdb A BC 0
Biounits:
2oxm.pdb1.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
UDG Domain P13051_140-302 2.1e-24 1 No_clan A 132 293 BC  H-Bb L-Bb L-Mj L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: Uracil-DNA glycosylase-like
    Superfamily: Uracil-DNA glycosylase-like
      Family: Uracil-DNA glycosylase
Uracil-DNA glycosylase A 82 304 BC  H-Bb L-Bb L-Mj L-Mn 
GO terms
Protein chains: GO type: GO description:
A=94-313 C mitochondrion
A=94-313 C nucleoplasm
A=94-313 C nucleus
A=94-313 F damaged DNA binding
A=94-313 F ribosomal small subunit binding
A=94-313 F uracil DNA N-glycosylase activity
A=94-313 P base-excision repair
A=94-313 P base-excision repair, AP site formation via deaminated base removal
A=94-313 P depyrimidination
A=94-313 P DNA repair
A=94-313 P isotype switching
A=94-313 P negative regulation of apoptotic process
A=94-313 P somatic hypermutation of immunoglobulin genes
A=94-313 P viral process
Sequences
Download file with secondary structure created by Stride  
2oxm.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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