General information
PDB ID 2OZB
Title STRUCTURE OF A HUMAN PRP31-15.5K-U4 SNRNA COMPLEX
PDB header RNA BINDING PROTEIN/RNA
Date 2007-02-26
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.6
Kind rna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2ozb.pdb ABDE CF 0
Biounits:
2ozb.pdb1.pdb AB C 1
2ozb.pdb2.pdb DE F 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L7Ae Domain P55769_20-114 2.3e-25 1 CL0101 A 20 114 C   
Ribosomal_L7Ae Domain P55769_20-114 2.2e-25 1 CL0101 D 20 114 F   
Nop Family Q8WWY3_99-330 1.6e-80 1 No_clan B 99 330 C   
Nop Family Q8WWY3_99-330 1.2e-81 1 No_clan E 99 330 F   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: Bacillus chorismate mutase-like
    Superfamily: L30e-like
      Family: L30e/L7ae ribosomal proteins
Spliceosomal 15.5kd protein A 4 128 C -
Class: Alpha and beta proteins (a+b)
  Fold: Bacillus chorismate mutase-like
    Superfamily: L30e-like
      Family: L30e/L7ae ribosomal proteins
Spliceosomal 15.5kd protein D 4 128 F -
Class: All alpha proteins
  Fold: Nop domain
    Superfamily: Nop domain
      Family: Nop domain
U4/U6 small nuclear ribonucleoprotein Prp31 B 85 333 C -
Class: All alpha proteins
  Fold: Nop domain
    Superfamily: Nop domain
      Family: Nop domain
U4/U6 small nuclear ribonucleoprotein Prp31 E 85 333 F -
GO terms
Protein chains: GO type: GO description:
A/D=1-128 C box C/D snoRNP complex
A/D=1-128 C dense fibrillar component
A/D=1-128 C nucleolus
A/D=1-128 C nucleoplasm
A/D=1-128 C nucleus
A/D=1-128 C precatalytic spliceosome
A/D=1-128 C protein-containing complex
A/D=1-128 C small-subunit processome
A/D=1-128 C U2-type precatalytic spliceosome
A/D=1-128 C U4/U6 x U5 tri-snRNP complex
A/D=1-128 C U4atac snRNP
A/D=1-128 F ATPase binding
A/D=1-128 F box C/D snoRNA binding
A/D=1-128 F RNA binding
A/D=1-128 F U3 snoRNA binding
A/D=1-128 F U4 snRNA binding
A/D=1-128 F U4atac snRNA binding
A/D=1-128 P box C/D snoRNP assembly
A/D=1-128 P maturation of LSU-rRNA
A/D=1-128 P maturation of SSU-rRNA
A/D=1-128 P mRNA splicing, via spliceosome
A/D=1-128 P rRNA processing
A/D=1-128 P single fertilization
B/E=78-333 C Cajal body
B/E=78-333 C MLL1 complex
B/E=78-333 C nuclear speck
B/E=78-333 C nucleoplasm
B/E=78-333 C nucleus
B/E=78-333 C precatalytic spliceosome
B/E=78-333 C spliceosomal tri-snRNP complex
B/E=78-333 C U2-type precatalytic spliceosome
B/E=78-333 C U2-type spliceosomal complex
B/E=78-333 C U4 snRNP
B/E=78-333 C U4/U6 x U5 tri-snRNP complex
B/E=78-333 C U4atac snRNP
B/E=78-333 F identical protein binding
B/E=78-333 F ribonucleoprotein complex binding
B/E=78-333 F RNA binding
B/E=78-333 F snRNP binding
B/E=78-333 F U4 snRNA binding
B/E=78-333 F U4atac snRNA binding
B/E=78-333 P mRNA splicing, via spliceosome
B/E=78-333 P ribonucleoprotein complex localization
B/E=78-333 P spliceosomal tri-snRNP complex assembly
Sequences
Download file with secondary structure created by Stride  
2ozb.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (rna): 
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2ozb.pdb2.pdb:   [ download sequences in FASTA format ]
D (protein): 
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E (protein): 
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F (rna): 
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