General information
PDB ID 2OZM
Title CRYSTAL STRUCTURE OF RB69 GP43 IN COMPLEX WITH DNA WITH 5-NITP OPPOSITE AN ABASIC SITE ANALOG
PDB header TRANSFERASE/DNA
Date 2007-02-26
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.86
Kind dna
Organism ENTEROBACTERIA PHAGE RB69
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2ozm.pdb A TP 0
Biounits:
2ozm.pdb1.pdb A TP 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B Family Q38087_363-784 3.9e-28 1 CL0194 A 350 791 PT  S-Bb L-Bb L-Mn 
DNA_pol_B_exo1 Family Q38087_19-293 2.1e-26 1 CL0219 A 19 293 P  L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Ribonuclease H-like
      Family: DnaQ-like 3'-5' exonuclease
Exonuclease domain of family B DNA polymerases A 1 375 P  L-Bb 
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: DNA polymerase I
Family B DNA polymerase A 376 903 PT -
GO terms
Protein chains: GO type: GO description:
A=1-903 F exonuclease activity
A=1-903 F DNA binding
A=1-903 F DNA-directed DNA polymerase activity
A=1-903 F nucleotide binding
A=1-903 P DNA replication
A=1-903 P nucleic acid phosphodiester bond hydrolysis
Sequences
Download file with secondary structure created by Stride  
2ozm.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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T (dna): 
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A (protein): 
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