General information
PDB ID 2PFP
Title DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND DCTP
PDB header TRANSFERASE, LYASE/DNA
Date 2007-04-05
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.1
Kind dna
Organism HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2pfp.pdb A TPD 0
Biounits:
2pfp.pdb1.pdb A TPD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B_palm Domain Q9UGP5_386-496 6.9e-36 1 CL0260 A 386 496 PT   
DNA_pol_lambd_f Domain Q9UGP5_336-384 5.6e-21 1 CL0198 A 336 384 PT   
HHH_8 Domain Q9UGP5_253-318 2.6e-18 1 CL0198 A 253 318 DT   
DNA_pol_B_thumb Family Q9UGP5_502-574 1.7e-22 1 No_clan A 502 574 PT   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: DNA polymerase beta, N-terminal domain-like
      Family: DNA polymerase beta, N-terminal domain-like
DNA polymerase lambda A 252 327 DT  H-Bb L-Bb 
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: PsbU/PolX domain-like
      Family: DNA polymerase beta-like, second domain
DNA polymerase lambda A 329 385 PT -
Class: Alpha and beta proteins (a+b)
  Fold: Nucleotidyltransferase
    Superfamily: Nucleotidyltransferase
      Family: DNA polymerase beta-like
DNA polymerase lambda A 386 575 PT -
GO terms
Protein chains: GO type: GO description:
A=242-575 C nucleus
A=242-575 F DNA binding
A=242-575 F metal ion binding
A=242-575 F DNA-directed DNA polymerase activity
A=242-575 F lyase activity
A=242-575 P somatic hypermutation of immunoglobulin genes
A=242-575 P DNA replication
A=242-575 P nucleotide-excision repair
Sequences
Download file with secondary structure created by Stride  
2pfp.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
Click "SHOW" for view sequence
P (dna): 
Click "SHOW" for view sequence
T (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text