General information
PDB ID 2PYO
Title DROSOPHILA NUCLEOSOME CORE
PDB header STRUCTURAL PROTEIN/DNA
Date 2007-05-16
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.43
Kind dna
Organism HOMO SAPIENS, DROSOPHILA MELANOGASTER
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2pyo.pdb ABCDEFGH IJ 0
Biounits:
2pyo.pdb1.pdb ABCDEFGH IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P02299_39-132 1.4e-46 1 CL0012 A 37 131 IJ   
CENP-T_C Domain P84040_23-99 0.0000000088 1 CL0012 B 25 98 IJ   
Histone Domain P84051_14-90 0.0000000000000085 1 CL0012 C 13 89 IJ   
Histone Domain P02283_30-99 2.8e-22 1 CL0012 D 28 98 IJ   
Histone Domain P02299_39-132 1.4e-46 1 CL0012 E 37 131 IJ   
CENP-T_C Domain P84040_18-99 0.00000001 1 CL0012 F 19 98 IJ   
Histone Domain P84051_14-90 0.0000000000000052 1 CL0012 G 11 89 IJ   
Histone Domain P02283_30-99 2.8e-22 1 CL0012 H 28 98 IJ   
Histone_H2A_C Family P84051_91-118 5.1e-20 1 No_clan C 90 120   
Histone_H2A_C Family P84051_91-118 1.3e-19 1 No_clan G 90 119   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H3 A 38 135 IJ  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H4 B 23 102 IJ  H-Bb S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H3 E 38 135 IJ  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H4 F 22 102 IJ  S-Bb L-Bb 
GO terms
Protein chains: GO type: GO description:
A/E=2-136 C nucleus
A/E=2-136 C nucleosome
A/E=2-136 F DNA binding
A/E=2-136 P nucleosome assembly
C/G=2-121 P centrosome duplication
D/H=2-123 C lipid particle
Sequences
Download file with secondary structure created by Stride  
2pyo.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
Click "SHOW" for view sequence
J (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text