General information
PDB ID 2Q2U
Title STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-PRODUCT DNA COMPLEX
PDB header LIGASE/DNA
Date 2007-05-29
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind dna
Organism PARAMECIUM BURSARIA CHLORELLA VIRUS 1
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2q2u.pdb ABCD EFGHIJKL 0
Biounits:
2q2u.pdb1.pdb A EF 1
2q2u.pdb2.pdb B GH 1
2q2u.pdb3.pdb C IJ 1
2q2u.pdb4.pdb D KL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_ligase_OB_2 Domain O41026_225-293 5.4e-18 1 CL0021 A 225 293 EF  H-Bb S-Bb L-Mn 
DNA_ligase_A_M Domain O41026_6-188 0.00000025 1 CL0078 A 6 188 EF  L-Bb 
DNA_ligase_OB_2 Domain O41026_225-293 5.4e-18 1 CL0021 B 225 293 GH  H-Bb S-Bb L-Mn 
DNA_ligase_A_M Domain O41026_6-188 0.00000025 1 CL0078 B 6 188 GH  L-Bb 
DNA_ligase_OB_2 Domain O41026_225-293 5.4e-18 1 CL0021 C 225 293 IJ  H-Bb S-Bb L-Mn 
DNA_ligase_A_M Domain O41026_6-188 0.00000025 1 CL0078 C 6 188 IJ  L-Bb 
DNA_ligase_OB_2 Domain O41026_225-293 5.4e-18 1 CL0021 D 225 293 KL  H-Bb S-Bb L-Mn 
DNA_ligase_A_M Domain O41026_6-188 0.00000025 1 CL0078 D 6 188 KL  L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: DNA ligase/mRNA capping enzyme postcatalytic domain
ATP-dependent DNA ligase A 190 293 EF -
Class: Alpha and beta proteins (a+b)
  Fold: ATP-grasp
    Superfamily: DNA ligase/mRNA capping enzyme, catalytic domain
      Family: ATP-dependent DNA ligase catalytic domain
ATP-dependent DNA ligase, N-terminal domain A 2 189 EF -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: DNA ligase/mRNA capping enzyme postcatalytic domain
ATP-dependent DNA ligase B 190 293 GH -
Class: Alpha and beta proteins (a+b)
  Fold: ATP-grasp
    Superfamily: DNA ligase/mRNA capping enzyme, catalytic domain
      Family: ATP-dependent DNA ligase catalytic domain
ATP-dependent DNA ligase, N-terminal domain B 2 189 GH -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: DNA ligase/mRNA capping enzyme postcatalytic domain
ATP-dependent DNA ligase C 190 293 IJ -
Class: Alpha and beta proteins (a+b)
  Fold: ATP-grasp
    Superfamily: DNA ligase/mRNA capping enzyme, catalytic domain
      Family: ATP-dependent DNA ligase catalytic domain
ATP-dependent DNA ligase, N-terminal domain C 2 189 IJ -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: DNA ligase/mRNA capping enzyme postcatalytic domain
ATP-dependent DNA ligase D 190 293 KL -
Class: Alpha and beta proteins (a+b)
  Fold: ATP-grasp
    Superfamily: DNA ligase/mRNA capping enzyme, catalytic domain
      Family: ATP-dependent DNA ligase catalytic domain
ATP-dependent DNA ligase, N-terminal domain D 2 189 KL -
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
2q2u.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
F (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
2q2u.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
Click "SHOW" for view sequence
H (dna): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
2q2u.pdb3.pdb:   [ download sequences in FASTA format ]
I (dna): 
Click "SHOW" for view sequence
J (dna): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
2q2u.pdb4.pdb:   [ download sequences in FASTA format ]
K (dna): 
Click "SHOW" for view sequence
L (dna): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text