General information
PDB ID 2QA4
Title A MORE COMPLETE STRUCTURE OF THE THE L7/L12 STALK OF THE HALOARCULA MARISMORTUI 50S LARGE RIBOSOMAL SUBUNIT
PDB header RIBOSOME
Date 2007-06-14
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind rna
Organism HALOARCULA MARISMORTUI
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2qa4.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZ123 09 0
Biounits:
2qa4.pdb1.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZ123 09 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L2_C Domain P20276_90-225 4.9e-46 1 CL0107 A 89 224 0   
Ribosomal_L2 Domain P20276_11-83 3.2e-17 1 CL0021 A 10 82 0   
Ribosomal_L5 Domain P14124_12-65 5e-16 1 CL0652 D 11 64 09   
Ribosomal_L5_C Domain P14124_69-166 0.000000038 1 No_clan D 68 152 09   
Ribosomal_L6 Domain P14135_8-80 0.0000000000000058 1 No_clan E 7 79 0   
Ribosomal_L6 Domain P14135_92-166 0.000000000000097 1 No_clan E 91 165 0   
Ribosomal_L7Ae Domain P12743_15-108 2.3e-25 1 CL0101 F 14 108 0   
Ribosomal_L11 Domain P14122_67-130 7.6e-17 1 No_clan I 68 130 0   
Ribosomal_L11_N Domain P14122_5-62 0.000000014 1 No_clan I 5 62   
Ribosomal_L14 Domain P22450_12-132 7.2e-36 1 No_clan K 12 132 0   
Ribosomal_L22 Domain P10970_17-149 7.2e-25 1 No_clan R 16 148 0   
Ribosomal_L30 Domain P14121_2-52 0.000000000073 1 No_clan W 2 52 09   
Ribosomal_L37e Family P32410_3-56 1.9e-22 1 CL0167 1 2 55 0   
Ribosomal_L39 Family P22452_8-49 0.0000000000000019 1 No_clan 2 7 48 0   
Ribosomal_L44 Family P32411_16-91 1.1e-25 1 CL0167 3 16 91 0   
Ribosomal_L3 Family P20279_2-338 1.2e-109 1 CL0575 B 1 337 0   
Ribosomal_L4 Family P12735_16-246 6.4e-41 1 No_clan C 16 246 0   
Ribosomal_L10 Family P15825_11-109 4e-22 1 No_clan G 11 109 0   
Ribosomal_L16 Family P60617_12-166 3.5e-24 1 No_clan H 9 164 09   
Ribosomal_L13 Family P29198_10-114 0.0000068 1 No_clan J 10 114 0   
Ribosomal_L27A Family P12737_25-143 9.4e-18 1 CL0588 L 24 142 0   
Ribosomal_L15e Family P60618_4-191 5.2e-78 1 CL0652 M 3 190 0   
Ribosomal_L5e Family P14123_5-100 6e-17 1 CL0267 N 4 99 09   
Ribosomal_L5e Family P14123_92-133 0.00000023 1 CL0267 N 91 132 09   
Ribosomal_L18 Family 0.0000086 0 CL0588 O 1 115 0
Ribosomal_L19e Family P14119_3-144 6.6e-56 1 No_clan P 2 143 0   
Ribosomal_L21e Family P12734_2-96 6.6e-26 1 CL0107 Q 2 94 09   
Ribosomal_L23 Family P12732_4-77 0.0000000000000011 1 No_clan S 3 76 0   
Ribosomal_L26 Family P10972_2-116 4.1e-23 1 No_clan T 1 115 0   
KOW Family P10972_45-76 0.000000038 1 CL0107 T 44 75 0   
Ribosomal_L24e Family P14116_5-57 5.1e-21 1 CL0175 U 4 56 0   
Ribosomal_L29 Family P10971_7-63 6.4e-20 1 CL0346 V 6 62 0   
Ribosomal_L31e Family P18138_8-85 0.0000000012 1 No_clan X 8 84 0   
Ribosomal_L32e Family P12736_126-231 4e-35 1 No_clan Y 125 230 0   
Ribosomal_L37ae Family P60619_11-82 2.1e-28 1 CL0167 Z 10 82 0   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit 1 1 56 0 -
Class: All alpha proteins
  Fold: Non-globular all-alpha subunits of globular proteins
    Superfamily: Ribosomal protein L39e
      Family: Ribosomal protein L39e
Ribosomal protein L39e 2 1 49 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit 3 1 92 0 -
Class: All beta proteins
  Fold: Reductase/isomerase/elongation factor common domain
    Superfamily: Translation proteins
      Family: Ribosomal protein L3
Ribosomal protein L3 B 1 337 0 -
Class: Alpha and beta proteins (a/b)
  Fold: Ribosomal protein L4
    Superfamily: Ribosomal protein L4
      Family: Ribosomal protein L4
Ribosomal protein L4 C 1 246 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit D 10 174 09 -
Class: Alpha and beta proteins (a+b)
  Fold: Bacillus chorismate mutase-like
    Superfamily: L30e-like
      Family: L30e/L7ae ribosomal proteins
Ribosomal protein L7ae F 1 119 0 -
Class: Peptides
  Fold: Ribosomal protein L10
    Superfamily: Ribosomal protein L10
      Family: Ribosomal protein L10
Ribosomal protein L10 G 12 73 0 -
Class: Alpha and beta proteins (a+b)
  Fold: alpha/beta-Hammerhead
    Superfamily: Ribosomal protein L16p/L10e
      Family: Ribosomal protein L10e
Ribosomal protein L10e H 1 163 09 -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Ribosomal protein L11, C-terminal domain
      Family: Ribosomal protein L11, C-terminal domain
Ribosomal protein L11, C-terminal domain I 67 130 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit J 4 145 0 -
Class: All beta proteins
  Fold: Ribosomal protein L14
    Superfamily: Ribosomal protein L14
      Family: Ribosomal protein L14
Ribosomal protein L14 K 1 132 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit L 1 150 0 -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal proteins S24e, L23 and L15e
    Superfamily: Ribosomal proteins S24e, L23 and L15e
      Family: L15e
Ribosomal protein L15e M 1 194 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit N 1 186 09 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit O 1 115 0 -
Class: All alpha proteins
  Fold: Ribosomal protein L19 (L19e)
    Superfamily: Ribosomal protein L19 (L19e)
      Family: Ribosomal protein L19 (L19e)
Ribosomal protein L19 (L19e) P 1 143 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit Q 1 95 09 -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein L22
    Superfamily: Ribosomal protein L22
      Family: Ribosomal protein L22
Ribosomal protein L22 R 1 150 0 -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal proteins S24e, L23 and L15e
    Superfamily: Ribosomal proteins S24e, L23 and L15e
      Family: L23p
Ribosomal protein L23 S 1 81 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit T 1 119 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit U 4 56 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit V 1 65 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit W 1 154 09 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit X 7 88 0 -
Class: Alpha and beta proteins (a/b)
  Fold: Barstar-like
    Superfamily: Ribosomal protein L32e
      Family: Ribosomal protein L32e
Ribosomal protein L32e Y 95 236 0 -
Class: Small proteins
  Fold: Rubredoxin-like
    Superfamily: Zn-binding ribosomal proteins
      Family: Ribosomal protein L37ae
Ribosomal protein L37ae Z 10 82 0 -
GO terms
Protein chains: GO type: GO description:
3=1-92 F metal ion binding
3=1-92 F tRNA binding
F=1-120 F RNA binding
G=1-348 P ribosome biogenesis
N=1-187 C ribosome
N=1-187 F 5S rRNA binding
N=1-187 F structural constituent of ribosome
N=1-187 P translation
W=1-154 C large ribosomal subunit
Y=1-241 F rRNA binding
Y=1-241 F DNA binding
Y=1-241 F nucleotide binding
Y=1-241 P DNA repair
Sequences
Download file with secondary structure created by Stride  
2qa4.pdb1.pdb:   [ download sequences in FASTA format ]
1 (protein): 
Click "SHOW" for view sequence
2 (protein): 
Click "SHOW" for view sequence
3 (protein): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
I (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
K (protein): 
Click "SHOW" for view sequence
L (protein): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
O (protein): 
Click "SHOW" for view sequence
P (protein): 
Click "SHOW" for view sequence
Q (protein): 
Click "SHOW" for view sequence
R (protein): 
Click "SHOW" for view sequence
S (protein): 
Click "SHOW" for view sequence
T (protein): 
Click "SHOW" for view sequence
U (protein): 
Click "SHOW" for view sequence
V (protein): 
Click "SHOW" for view sequence
W (protein): 
Click "SHOW" for view sequence
X (protein): 
Click "SHOW" for view sequence
Y (protein): 
Click "SHOW" for view sequence
Z (protein): 
Click "SHOW" for view sequence
0 (rna): 
Click "SHOW" for view sequence
9 (rna): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text