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Composition of PDB entry and biounits
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File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
PDB entry: | |||||
pdb2r92.pdb | ABCDEFGHIJKL | PT | 0 |
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Biounits: | |||||
2r92.pdb1.pdb | ABCDEFGHIJKL | PT | 1 |
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Pfam domains
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Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Domain | P04050_11-340 | 2.7e-115 | 1 | No_clan | A | 11 | 340 | PT |
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Domain | P04050_807-1397 | 1.6e-93 | 1 | No_clan | A | 807 | 1397 | T |
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Domain | P04050_342-507 | 1.7e-77 | 1 | No_clan | A | 342 | 507 | T |
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Domain | P04050_873-1056 | 2.4e-63 | 1 | No_clan | A | 873 | 1056 |
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Domain | P04050_510-669 | 7.9e-47 | 1 | No_clan | A | 510 | 669 |
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Domain | P04050_1141-1274 | 2.2e-38 | 1 | No_clan | A | 1141 | 1274 |
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Domain | P04050_693-800 | 5.3e-35 | 1 | No_clan | A | 693 | 800 |
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Domain | P08518_752-1124 | 7.5e-122 | 1 |
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B | 752 | 1124 | PT |
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Domain | P08518_219-407 | 2.3e-51 | 1 | No_clan | B | 219 | 407 |
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Domain | P08518_1126-1219 | 1.7e-33 | 1 | No_clan | B | 1126 | 1219 |
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Domain | P08518_580-641 | 1.5e-25 | 1 | No_clan | B | 580 | 641 |
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Domain | P08518_481-545 | 9.3e-20 | 1 | No_clan | B | 481 | 545 |
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Domain | P08518_681-745 | 1.4e-19 | 1 | No_clan | B | 681 | 745 |
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Domain | P16370_49-171 | 7.3e-32 | 1 | No_clan | C | 49 | 171 |
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Domain | P16370_19-255 | 6.7e-19 | 1 |
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C | 19 | 255 |
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Domain | P20434_142-214 | 1.6e-31 | 1 | No_clan | E | 142 | 214 |
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Domain | P20434_6-100 | 1.1e-29 | 1 |
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E | 6 | 100 |
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Domain | P34087_80-161 | 6.2e-18 | 1 |
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G | 80 | 161 |
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Domain | P34087_8-79 | 2.6e-16 | 1 |
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G | 8 | 79 |
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Domain | P27999_4-41 | 1.2e-17 | 1 |
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I | 4 | 41 |
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Domain | P27999_73-111 | 1.3e-14 | 1 |
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I | 73 | 111 |
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Domain | P22139_1-60 | 5.4e-30 | 1 | No_clan | J | 1 | 60 |
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Domain | P38902_30-104 | 1.5e-24 | 1 |
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K | 30 | 104 |
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Domain | P40422_29-60 | 1.9e-16 | 1 |
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L | 29 | 60 |
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Family | P08518_42-455 | 8.5e-54 | 1 | No_clan | B | 42 | 455 |
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Family | P20433_49-218 | 8.6e-39 | 1 |
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D | 49 | 218 |
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Family | P20435_79-132 | 8.3e-18 | 1 | No_clan | F | 79 | 132 |
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Family | P20436_7-146 | 3e-43 | 1 |
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H | 7 | 146 |
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SCOP domains
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Classification: | Protein: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
Complete 12-subunit RNA polymerase II complex | A | 2 | 1455 | PT | - |
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RBP2 | B | 20 | 1224 | PT | - |
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Complete 12-subunit RNA polymerase II complex | D | 4 | 221 | - |
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RPB6 | F | 72 | 155 | - |
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Complete 12-subunit RNA polymerase II complex | G | 1 | 171 | - |
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RNA polymerase subunit RBP8 | H | 2 | 146 | - |
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RNA polymerase subunit RPB10 | J | 1 | 65 | - |
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Complete 12-subunit RNA polymerase II complex | K | 1 | 112 | - |
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RBP12 subunit of RNA polymerase II | L | 25 | 70 | - |
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GO terms | ||
Protein chains: | GO type: | GO description: |
B=1-1224 | C | mitochondrion |
B=1-1224 | F | ribonucleoside binding |
C=1-318 | P | termination of RNA polymerase II transcription |
D=1-221 | F | nucleotide binding |
D=1-221 | P | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay |
D=1-221 | P | mRNA export from nucleus in response to heat stress |
D=1-221 | P | recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex |
D=1-221 | P | DNA repair |
E=1-215 | P | tRNA transcription from RNA polymerase III promoter |
F=1-155 | C | cytoplasm |
G=1-171 | C | cytoplasmic mRNA processing body |
G=1-171 | F | single-stranded DNA binding |
G=1-171 | F | single-stranded RNA binding |
G=1-171 | P | positive regulation of translational initiation |
G=1-171 | P | nuclear-transcribed mRNA catabolic process, exonucleolytic |
G=1-171 | P | positive regulation of nuclear-transcribed mRNA poly(A) tail shortening |
I=1-122 | F | zinc ion binding |
I=1-122 | P | transcription initiation from RNA polymerase II promoter |
I=1-122 | P | maintenance of transcriptional fidelity during DNA-dependent transcription elongation from RNA polymerase II promoter |
I=1-122 | P | transcription-coupled nucleotide-excision repair |
L=1-70 | C | DNA-directed RNA polymerase I complex |
L=1-70 | C | DNA-directed RNA polymerase II, core complex |
L=1-70 | C | DNA-directed RNA polymerase III complex |
L=1-70 | F | DNA-directed RNA polymerase activity |
L=1-70 | F | metal ion binding |
L=1-70 | F | DNA binding |
L=1-70 | P | transcription from RNA polymerase I promoter |
L=1-70 | P | transcription from RNA polymerase II promoter |
L=1-70 | P | transcription from RNA polymerase III promoter |
Sequences
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2r92.pdb1.pdb:
[
download sequences in FASTA format
]
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A (protein):
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B (protein):
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C (protein):
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D (protein):
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E (protein):
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F (protein):
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G (protein):
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H (protein):
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I (protein):
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J (protein):
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K (protein):
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L (protein):
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P (rna):
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T (rna):
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