General information
PDB ID 2RFK
Title SUBSTRATE RNA POSITIONING IN THE ARCHAEAL H/ACA RIBONUCLEOPROTEIN COMPLEX
PDB header ISOMERASE/RNA
Date 2007-09-30
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.87
Kind rna
Organism PYROCOCCUS FURIOSUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2rfk.pdb ABC DEF 0
Biounits:
2rfk.pdb1.pdb ABC DEF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DKCLD Domain Q7LWY0_9-63 1.3e-19 1 CL0649 A 11 66 E   
Gar1 Domain Q8U029_8-81 0.000000016 1 CL0575 C 1 74   
TruB_C_2 Family Q7LWY0_181-248 2.1e-23 1 CL0649 A 184 251   
PUA Family Q7LWY0_251-324 2.5e-21 1 CL0178 A 254 327 DE   
TruB_N Family Q7LWY0_67-123 0.000000000000044 1 CL0649 A 70 126 DE   
TruB_N Family Q7LWY0_117-180 0.0000017 1 CL0649 A 120 183   
Nop10p Family Q8U1R4_3-52 1.5e-26 1 No_clan B 3 52   
RecR Family 0.00011 0 No_clan B 4 27
PolC_DP2 Family 0.00041 0 No_clan B 3 50
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: PUA domain-like
    Superfamily: PUA domain-like
      Family: PUA domain
Pseudouridine synthase II TruB, C-terminal domain A 253 336 DE -
Class: Alpha and beta proteins (a+b)
  Fold: Pseudouridine synthase
    Superfamily: Pseudouridine synthase
      Family: Pseudouridine synthase II TruB
Pseudouridine synthase II TruB A 8 252 DE -
Class: Small proteins
  Fold: Rubredoxin-like
    Superfamily: Nop10-like SnoRNP
      Family: Nucleolar RNA-binding protein Nop10-like
Ribosome biogenesis protein Nop10 B 4 55 -
Class: All beta proteins
  Fold: Reductase/isomerase/elongation factor common domain
    Superfamily: Translation proteins
      Family: Gar1-like SnoRNP
Gar1 homolog PF1791 C 1 73 -
GO terms
Protein chains: GO type: GO description:
A=5-338 F pseudouridine synthase activity
A=5-338 F RNA binding
A=5-338 P pseudouridine synthesis
A=5-338 P tRNA processing
B=3-55 C ribonucleoprotein complex
B=3-55 P rRNA processing
Sequences
Download file with secondary structure created by Stride  
2rfk.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (rna): 
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E (rna): 
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F (rna): 
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