General information
PDB ID 2UP1
Title STRUCTURE OF UP1-TELOMERIC DNA COMPLEX
PDB header GENE REGULATION/DNA
Date 1998-07-10
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.1
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2up1.pdb A B 0
Biounits:
2up1.pdb1.pdb A B 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RRM_1 Domain P09651_16-85 3.4e-18 1 CL0221 A 16 85 B   
RRM_1 Domain P09651_107-176 1.3e-16 1 CL0221 A 107 176   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: Ferredoxin-like
    Superfamily: RNA-binding domain, RBD
      Family: Canonical RBD
Nuclear ribonucleoprotein A1 (RNP A1, UP1) A 8 98 B -
Class: Alpha and beta proteins (a+b)
  Fold: Ferredoxin-like
    Superfamily: RNA-binding domain, RBD
      Family: Canonical RBD
Nuclear ribonucleoprotein A1 (RNP A1, UP1) A 99 190 B -
GO terms
Protein chains: GO type: GO description:
A=8-190 C nucleoplasm
A=8-190 C nucleolus
A=8-190 C catalytic step 2 spliceosome
A=8-190 C heterogeneous nuclear ribonucleoprotein complex
A=8-190 C cytoplasm
A=8-190 F single-stranded DNA binding
A=8-190 F nucleotide binding
A=8-190 F single-stranded RNA binding
A=8-190 P nuclear import
A=8-190 P virus-host interaction
A=8-190 P nuclear mRNA splicing, via spliceosome
A=8-190 P RNA export from nucleus
A=8-190 P mRNA transport
Sequences
Download file with secondary structure created by Stride  
2up1.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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A (protein): 
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