General information
PDB ID 2VA2
Title COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4- DIFLUOROTOLUENE NUCLEOTIDE IN THE TEMPLATE STRAND
PDB header TRANSFERASE/DNA
Date 2007-08-28
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind dna
Organism SULFOLOBUS SOLFATARICUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2va2.pdb AB CDEF 0
Biounits:
2va2.pdb1.pdb A CD 1
2va2.pdb2.pdb B EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
IMS Family Q97W02_6-156 4.6e-45 1 No_clan A 6 156 CD   
IMS Family Q97W02_6-156 4.7e-45 1 No_clan B 6 156 EF   
IMS_HHH Motif Q97W02_168-199 0.0000003 1 CL0198 A 168 199 C   
IMS_HHH Motif Q97W02_168-199 0.0000003 1 CL0198 B 168 199 E  H-Bb L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: Lesion bypass DNA polymerase (Y-family), little finger domain
    Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain
      Family: Lesion bypass DNA polymerase (Y-family), little finger domain
DinB homolog (DBH) A 241 342 CD -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: Lesion bypass DNA polymerase (Y-family), catalytic domain
DinB homolog (DBH) A 1 240 CD -
Class: Alpha and beta proteins (a+b)
  Fold: Lesion bypass DNA polymerase (Y-family), little finger domain
    Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain
      Family: Lesion bypass DNA polymerase (Y-family), little finger domain
DinB homolog (DBH) B 241 342 EF -
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: Lesion bypass DNA polymerase (Y-family), catalytic domain
DinB homolog (DBH) B 1 240 EF -
GO terms
Protein chains: GO type: GO description:
A/B=1-352 C cytoplasm
A/B=1-352 F metal ion binding
A/B=1-352 F damaged DNA binding
A/B=1-352 F DNA-directed DNA polymerase activity
A/B=1-352 P DNA repair
A/B=1-352 P DNA replication
Sequences
Download file with secondary structure created by Stride  
2va2.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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2va2.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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