General information
PDB ID 2VWJ
Title URACIL RECOGNITION IN ARCHAEAL DNA POLYMERASES CAPTURED BY X-RAY CRYSTALLOGRAPHY.
PDB header DNA REPLICATION
Date 2008-06-25
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.78
Kind dna
Organism THERMOCOCCUS GORGONARIUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2vwj.pdb A B 0
Biounits:
2vwj.pdb1.pdb A B 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B Family P56689_344-748 3.4e-83 1 CL0194 A 335 748 B   
DNA_pol_B_exo1 Family P56689_126-278 7.8e-33 1 CL0219 A 127 278 B   
DNA_pol_B_exo1 Family P56689_20-131 0.00000000000013 1 CL0219 A 20 131 B   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Ribonuclease H-like
      Family: DnaQ-like 3'-5' exonuclease
Exonuclease domain of family B DNA polymerases A 1 347 B  H-Mn L-Bb 
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: DNA polymerase I
Family B DNA polymerase A 348 756 B -
GO terms
Protein chains: GO type: GO description:
A=1-773 F nucleotide binding
A=1-773 F DNA-directed DNA polymerase activity
A=1-773 F exonuclease activity
A=1-773 F DNA binding
A=1-773 P nucleic acid phosphodiester bond hydrolysis
A=1-773 P DNA replication
Sequences
Download file with secondary structure created by Stride  
2vwj.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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A (protein): 
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