General information
PDB ID 2WW9
Title CRYO-EM STRUCTURE OF THE ACTIVE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S RIBOSOME
PDB header RIBOSOME
Date 2009-10-22
Experimental method ELECTRON MICROSCOPY
Resolution (A) 8.6
Kind rna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2ww9.pdb ABCHIJKLMNO DEFG 0
Biounits:
2ww9.pdb1.pdb ABCHIJKLMNO DEFG 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Plug_translocon Domain P38353_41-76 0.0000000019 1 No_clan A 41 76   
Ribosomal_L22 Domain P05740_17-151 8.5e-39 1 No_clan I 17 151 EF   
SecY Family P38353_78-473 9.1e-44 1 No_clan A 78 473 DF   
SecE Family P35179_26-79 0.000000000066 1 No_clan B 26 79   
Sec61_beta Family P52871_58-78 0.000002 1 No_clan C 58 78   
Ribosomal_L4 Family P49626_20-261 2.9e-44 1 No_clan H 20 261   
Ribosomal_L19e Family P0CX82_3-53 2.9e-20 1 No_clan J 3 53 FG   
Ribosomal_L23 Family P04456_61-135 1e-16 1 No_clan K 61 135 DF   
Ribosomal_L26 Family P05743_9-122 4.9e-36 1 No_clan L 9 122 DE   
KOW Family P05743_52-90 0.000034 1 CL0107 L 52 90 DE   
Ribosomal_L31e Family P0C2H8_9-87 4.3e-39 1 No_clan M 9 87   
Ribosomal_L29 Family P0CX84_7-61 1.1e-16 1 CL0346 N 7 61 D   
Ribosomal_L39 Family P04650_9-37 0.0000000000089 1 No_clan O 9 37 DE   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-490 F signal sequence binding
A=1-490 F protein transmembrane transporter activity
A=1-490 P SRP-dependent cotranslational protein targeting to membrane
B=1-80 C integral to membrane
B=1-80 C Sec61 translocon complex
B=1-80 C Ssh1 translocon complex
B=1-80 F P-P-bond-hydrolysis-driven protein transmembrane transporter activity
B=1-80 F structural molecule activity
B=1-80 P posttranslational protein targeting to membrane, translocation
B=1-80 P SRP-dependent cotranslational protein targeting to membrane, translocation
C=1-87 F ARF guanyl-nucleotide exchange factor activity
H=1-362 F RNA binding
I=1-184 C cytosolic large ribosomal subunit
I=1-184 F structural constituent of ribosome
I=1-184 P cytoplasmic translation
K=1-142 F rRNA binding
K=1-142 F nucleotide binding
K=1-142 P ribosomal large subunit assembly
M=1-113 P regulation of translational fidelity
N=1-120 C preribosome, large subunit precursor
N=1-120 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Sequences
Download file with secondary structure created by Stride  
2ww9.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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D (rna): 
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E (rna): 
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F (rna): 
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G (rna): 
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