General information
PDB ID 2WWB
Title CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME
PDB header RIBOSOME
Date 2009-10-22
Experimental method ELECTRON MICROSCOPY
Resolution (A) 6.48
Kind rna
Organism CANIS LUPUS FAMILIARIS, TRITICUM AESTIVUM
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2wwb.pdb ABCHIJKLMNO DEFG 0
Biounits:
2wwb.pdb1.pdb ABCHIJKLMNO DEFG 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Plug_translocon Domain P38377_40-74 2.2e-18 1 No_clan A 40 74   
Ribosomal_L22 Domain P05740_17-151 8.5e-39 1 No_clan I 17 151 EF   
SecY Family P38377_75-458 2.3e-77 1 No_clan A 75 458 DF   
SecE Family P60058_12-66 0.0000000000000029 1 No_clan B 12 65   
Sec61_beta Family P60467_61-91 0.000000000000018 1 No_clan C 61 91   
Ribosomal_L4 Family P49626_20-261 2.9e-44 1 No_clan H 20 261   
Ribosomal_L19e Family 2.9e-20 1 No_clan J 3 53 FG
Ribosomal_L23 Family P04456_61-135 1e-16 1 No_clan K 61 135 DF   
Ribosomal_L26 Family P05743_9-122 4.9e-36 1 No_clan L 9 122 DE   
KOW Family P05743_52-90 0.000034 1 CL0107 L 52 90 DE   
Ribosomal_L31e Family P0C2H8_9-87 4.3e-39 1 No_clan M 9 87   
Ribosomal_L29 Family P0CX84_7-61 1.1e-16 1 CL0346 N 7 61 D   
Ribosomal_L39 Family P04650_9-37 0.0000000000089 1 No_clan O 9 37 DE   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
B=1-68 C integral to endoplasmic reticulum membrane
B=1-68 P protein targeting to ER
C=1-96 C integral to membrane
C=1-96 C endoplasmic reticulum Sec complex
C=1-96 F P-P-bond-hydrolysis-driven protein transmembrane transporter activity
C=1-96 P ER-associated protein catabolic process
C=1-96 P retrograde protein transport, ER to cytosol
C=1-96 P protein import into nucleus, translocation
Sequences
Download file with secondary structure created by Stride  
2wwb.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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D (rna): 
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E (rna): 
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F (rna): 
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G (rna): 
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