General information
PDB ID 2XGJ
Title STRUCTURE OF MTR4, A DEXH HELICASE INVOLVED IN NUCLEAR RNA PROCESSING AND SURVEILLANCE
PDB header HYDROLASE/RNA
Date 2010-06-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.9
Kind rna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2xgj.pdb AB CD 0
Biounits:
2xgj.pdb1.pdb A C 1
2xgj.pdb2.pdb B D 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
rRNA_proc-arch Domain P47047_602-872 2e-84 1 No_clan A 602 872   
DSHCT Domain P47047_898-1068 2.3e-54 1 No_clan A 898 1068 C   
DEAD Domain P47047_151-302 6.3e-18 1 CL0023 A 151 302 C   
DSHCT Domain P47047_898-1068 1.6e-54 1 No_clan B 898 1068 D   
rRNA_proc-arch Domain 6.8e-21 1 No_clan B 602 811
DEAD Domain P47047_151-302 4.5e-18 1 CL0023 B 151 302 D   
rRNA_proc-arch Domain 2.5e-14 1 No_clan B 670 872
Helicase_C Family P47047_392-548 1.6e-05 1 CL0023 A 393 548 C   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=81-1073 C nucleolus
A/B=81-1073 C TRAMP complex
A/B=81-1073 F poly(A) RNA binding
A/B=81-1073 F oxidoreductase activity
A/B=81-1073 F ATP binding
A/B=81-1073 F ATP-dependent 3'-5' RNA helicase activity
A/B=81-1073 P U4 snRNA 3'-end processing
A/B=81-1073 P nuclear polyadenylation-dependent mRNA catabolic process
A/B=81-1073 P nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription
A/B=81-1073 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A/B=81-1073 P U5 snRNA 3'-end processing
A/B=81-1073 P ncRNA polyadenylation
A/B=81-1073 P polyadenylation-dependent snoRNA 3'-end processing
A/B=81-1073 P nuclear polyadenylation-dependent rRNA catabolic process
A/B=81-1073 P nuclear polyadenylation-dependent tRNA catabolic process
Sequences
Download file with secondary structure created by Stride  
2xgj.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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C (rna): 
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2xgj.pdb2.pdb:   [ download sequences in FASTA format ]
B (protein): 
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D (rna): 
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