General information
PDB ID 2ZKD
Title CRYSTAL STRUCTURE OF THE SRA DOMAIN OF MOUSE NP95 IN COMPLEX WITH HEMI-METHYLATED CPG DNA
PDB header LIGASE
Date 2008-03-19
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.6
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2zkd.pdb AB CDEF 0
Biounits:
2zkd.pdb1.pdb A CD 1
2zkd.pdb2.pdb B EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
SAD_SRA Domain Q8VDF2_422-590 9.8e-59 1 CL0178 A 422 590 CD  H-Bb S-Bb L-Bb L-Mj L-Mn 
SAD_SRA Domain Q8VDF2_422-590 9.6e-59 1 CL0178 B 422 590 EF  H-Bb S-Bb L-Bb L-Mj L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: PUA domain-like
    Superfamily: PUA domain-like
      Family: SRA domain-like
E3 ubiquitin-protein ligase UHRF1 A 405 613 CD -
Class: All beta proteins
  Fold: PUA domain-like
    Superfamily: PUA domain-like
      Family: SRA domain-like
E3 ubiquitin-protein ligase UHRF1 B 405 612 EF -
GO terms
Protein chains: GO type: GO description:
A/B=404-613 C cytoplasmic vesicle
A/B=404-613 C euchromatin
A/B=404-613 C heterochromatin
A/B=404-613 C nuclear chromatin
A/B=404-613 C nuclear heterochromatin
A/B=404-613 C nuclear matrix
A/B=404-613 C nucleoplasm
A/B=404-613 C nucleus
A/B=404-613 C plasma membrane
A/B=404-613 C replication fork
A/B=404-613 F cis-regulatory region sequence-specific DNA binding
A/B=404-613 F hemi-methylated DNA-binding
A/B=404-613 F histone binding
A/B=404-613 F identical protein binding
A/B=404-613 F methyl-CpG binding
A/B=404-613 F methylated histone binding
A/B=404-613 F nucleosomal histone binding
A/B=404-613 F ubiquitin protein ligase activity
A/B=404-613 F ubiquitin-protein transferase activity
A/B=404-613 F zinc ion binding
A/B=404-613 P cell cycle
A/B=404-613 P DNA repair
A/B=404-613 P histone monoubiquitination
A/B=404-613 P histone ubiquitination
A/B=404-613 P maintenance of DNA methylation
A/B=404-613 P negative regulation of transcription by RNA polymerase II
A/B=404-613 P positive regulation of cellular protein metabolic process
A/B=404-613 P protein autoubiquitination
A/B=404-613 P protein ubiquitination
A/B=404-613 P regulation of epithelial cell proliferation
A/B=404-613 P ubiquitin-dependent protein catabolic process
Sequences
Download file with secondary structure created by Stride  
2zkd.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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2zkd.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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