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Composition of PDB entry and biounits
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File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
PDB entry: | |||||
pdb3jap.pdb | ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmopqrs | 123 | 0 |
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Biounits: | |||||
3jap.pdb1.pdb | ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmopqrs | 123 | 1 |
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Pfam domains
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Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Domain | Q6CKL3_81-145 | 9.4e-27 | 1 |
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C | 81 | 145 | 2 |
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Domain | Q6CKL3_164-235 | 1.3e-23 | 1 |
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C | 164 | 235 | 2 |
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Domain | Q6CRK7_105-188 | 2.9e-22 | 1 | No_clan | D | 105 | 188 | 2 |
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Domain | Q6CRK7_20-96 | 3.4e-11 | 1 |
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D | 20 | 96 | 2 |
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Domain | Q6CWJ2_3-39 | 2.4e-20 | 1 | No_clan | E | 3 | 39 | 2 |
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Domain | Q6CWJ2_42-90 | 3.7e-08 | 1 |
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E | 42 | 90 | 2 |
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Domain | Q6CRA3_74-227 | 1.7e-36 | 1 | No_clan | F | 74 | 227 | 23 |
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Domain | P69061_102-145 | 8.4e-26 | 1 |
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f | 102 | 145 | 2 |
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Domain | P38912_32-94 | 2.5e-20 | 1 |
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i | 32 | 94 | 2 |
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Domain | P20459_13-88 | 1.6e-14 | 1 |
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j | 13 | 88 | 12 |
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Domain | Q6CM18_107-153 | 7.7e-13 | 1 |
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J | 107 | 153 | 12 |
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Domain | Q6CVZ5_3-95 | 7.9e-42 | 1 | No_clan | K | 3 | 95 | 2 |
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Domain | P32481_428-517 | 1.5e-35 | 1 | No_clan | k | 428 | 517 |
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Domain | P32481_98-304 | 2.5e-23 | 1 |
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k | 98 | 304 | 1 |
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Domain | P32481_339-418 | 3.2e-11 | 1 |
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k | 335 | 418 | 1 |
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Domain | Q6CX80_73-141 | 8.3e-28 | 1 |
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L | 73 | 141 | 2 |
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Domain | P32911_23-99 | 3.8e-27 | 1 | No_clan | m | 22 | 99 | 12 |
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Domain | Q6CLU4_19-114 | 2.2e-18 | 1 |
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M | 19 | 114 | 12 |
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Domain | Q6CJK0_2-60 | 1.5e-26 | 1 | No_clan | N | 2 | 60 | 2 |
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Domain | Q6CJK0_70-149 | 1.4e-15 | 1 |
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N | 70 | 149 | 2 |
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Domain | P27069_350-455 | 3e-05 | 1 |
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o | 382 | 493 |
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Domain | Q6CKV4_43-128 | 1.7e-34 | 1 | No_clan | P | 43 | 128 | 2 |
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Domain | P32497_650-780 | 1.8e-14 | 1 |
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p | 650 | 780 |
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Domain | Q6CW21_5-130 | 1.4e-23 | 1 | No_clan | W | 5 | 130 | 2 |
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Family | Q6CS01_2-98 | 2.1e-48 | 1 | No_clan | a | 2 | 99 | 23 |
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Family | Q6CN12_110-183 | 2.2e-13 | 1 |
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A | 111 | 183 | 2 |
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Family | Q6CN12_17-117 | 2.9e-09 | 1 |
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A | 17 | 116 | 23 |
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Family | Q6CWD0_20-221 | 9e-90 | 1 | No_clan | B | 5 | 221 | 2 |
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Family | Q6CNL2_28-82 | 1.9e-29 | 1 |
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b | 28 | 82 | 2 |
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Family | P33285_5-66 | 1.1e-32 | 1 |
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c | 6 | 66 | 2 |
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Family | Q6CPG3_6-56 | 2.6e-14 | 1 | No_clan | d | 6 | 56 | 2 |
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Family | Q6CWJ2_95-169 | 1.1e-37 | 1 | No_clan | E | 95 | 169 | 2 |
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Family | Q6CUH5_9-61 | 9.7e-26 | 1 | No_clan | e | 8 | 61 | 2 |
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Family | Q6CWJ2_212-259 | 9.3e-25 | 1 | No_clan | E | 212 | 259 | 2 |
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Family | Q6CWJ2_177-211 | 4.9e-06 | 1 |
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E | 177 | 211 | 2 |
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Family | Q6CM04_1-126 | 2e-58 | 1 | No_clan | G | 1 | 126 | 2 |
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Family | Q6CTD6_5-187 | 4.1e-79 | 1 |
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H | 5 | 187 | 2 |
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Family | P0CX86_1-25 | 1.2e-10 | 1 |
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h | 1 | 25 | 2 |
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Family | Q6CMG3_2-185 | 2e-57 | 1 | No_clan | I | 2 | 185 | 123 |
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Family | P20459_126-237 | 1.7e-27 | 1 | No_clan | j | 126 | 237 | 12 |
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Family | Q6CM18_2-128 | 9.1e-05 | 1 |
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J | 3 | 128 | 12 |
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Family | P09064_157-265 | 1.3e-38 | 1 | No_clan | l | 140 | 265 | 12 |
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Family | Q6CX80_8-71 | 9.6e-33 | 1 | No_clan | L | 8 | 71 | 2 |
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Family | P27069_15-133 | 3.9e-46 | 1 |
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O | 15 | 133 | 2 |
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Family | P32497_251-640 | 5.2e-159 | 1 | No_clan | p | 212 | 640 | 2 |
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Family | Q875N2_11-143 | 1.6e-32 | 1 |
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Q | 11 | 143 | 12 |
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Family | Q6CWU3_2-126 | 5.1e-54 | 1 | No_clan | R | 2 | 122 | 2 |
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Family | Q6CWT9_16-144 | 4e-57 | 1 |
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S | 16 | 144 | 2 |
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Family | A6ZZ25_45-96 | 3.9e-12 | 1 |
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s | 45 | 96 | 2 |
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Family | Q6CXM0_5-142 | 2.3e-53 | 1 |
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T | 5 | 142 | 2 |
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Family | Q6CIM1_20-114 | 4.1e-24 | 1 | No_clan | U | 23 | 117 | 2 |
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Family | Q6CXT6_1-80 | 4.1e-40 | 1 | No_clan | V | 1 | 80 | 2 |
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Family | F2Z602_31-144 | 1.4e-51 | 1 |
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X | 31 | 144 | 2 |
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Family | Q6CU44_24-102 | 1.7e-35 | 1 | No_clan | Y | 24 | 102 | 2 |
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Family | Q6CW78_36-104 | 1.1e-24 | 1 |
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Z | 36 | 104 | 2 |
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Repeat | Q6CNI7_194-231 | 1.3e-08 | 1 |
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g | 56 | 94 | 2 |
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Repeat | Q6CNI7_286-321 | 7e-06 | 1 |
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g | 98 | 136 | 2 |
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Repeat | Q6CNI7_286-321 | 2.3e-05 | 1 |
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g | 193 | 231 | 2 |
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Repeat | P40217_42-80 | 2.6e-05 | 1 |
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q | 42 | 80 | 2 |
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SCOP domains
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No SCOP domains | |||||||
GO terms | ||
Protein chains: | GO type: | GO description: |
A=1-254 | C | cytosolic small ribosomal subunit |
A=1-254 | F | structural constituent of ribosome |
A=1-254 | P | ribosomal small subunit assembly |
A=1-254 | P | translation |
B=1-255 | C | cytosolic small ribosomal subunit |
B=1-255 | F | structural constituent of ribosome |
B=1-255 | P | translation |
c=1-67 | C | cytosolic small ribosomal subunit |
c=1-67 | F | structural constituent of ribosome |
c=1-67 | P | positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay |
c=1-67 | P | rRNA export from nucleus |
c=1-67 | P | translation |
d=1-56 | C | ribosome |
d=1-56 | F | structural constituent of ribosome |
d=1-56 | F | zinc ion binding |
d=1-56 | P | translation |
f=1-150 | C | cytosolic small ribosomal subunit |
f=1-150 | C | nucleus |
f=1-150 | F | metal ion binding |
f=1-150 | F | protein tag |
f=1-150 | F | structural constituent of ribosome |
f=1-150 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) |
f=1-150 | P | ribosomal small subunit assembly |
f=1-150 | P | translation |
G=1-236 | C | ribosome |
G=1-236 | F | structural constituent of ribosome |
G=1-236 | P | translation |
h=1-25 | C | cytosolic large ribosomal subunit |
h=1-25 | F | structural constituent of ribosome |
h=1-25 | P | cytoplasmic translation |
i=1-153 | C | cytoplasmic stress granule |
i=1-153 | C | eukaryotic 43S preinitiation complex |
i=1-153 | C | eukaryotic 48S preinitiation complex |
i=1-153 | F | double-stranded RNA binding |
i=1-153 | F | protein kinase binding |
i=1-153 | F | ribosomal small subunit binding |
i=1-153 | F | translation initiation factor activity |
i=1-153 | F | translation initiation factor binding |
i=1-153 | P | formation of cytoplasmic translation initiation complex |
i=1-153 | P | formation of translation initiation ternary complex |
i=1-153 | P | formation of translation preinitiation complex |
i=1-153 | P | translation reinitiation |
j=1-304 | C | cytoplasm |
j=1-304 | C | cytoplasmic stress granule |
j=1-304 | C | eukaryotic 48S preinitiation complex |
j=1-304 | C | eukaryotic translation initiation factor 2 complex |
j=1-304 | C | eukaryotic translation initiation factor 2B complex |
j=1-304 | C | multi-eIF complex |
j=1-304 | F | ribosome binding |
j=1-304 | F | RNA binding |
j=1-304 | F | translation initiation factor activity |
j=1-304 | P | formation of translation preinitiation complex |
k=1-527 | C | cytoplasm |
k=1-527 | C | cytosol |
k=1-527 | C | eukaryotic 43S preinitiation complex |
k=1-527 | C | eukaryotic 48S preinitiation complex |
k=1-527 | C | eukaryotic translation initiation factor 2 complex |
k=1-527 | C | multi-eIF complex |
k=1-527 | F | GTP binding |
k=1-527 | F | GTPase activity |
k=1-527 | F | translation initiation factor activity |
k=1-527 | F | translation initiation factor binding |
k=1-527 | P | formation of translation preinitiation complex |
k=1-527 | P | positive regulation of translational fidelity |
k=1-527 | P | translational initiation |
l=1-285 | C | eukaryotic 43S preinitiation complex |
l=1-285 | C | eukaryotic translation initiation factor 2 complex |
l=1-285 | C | multi-eIF complex |
l=1-285 | F | metal ion binding |
l=1-285 | F | mRNA binding |
l=1-285 | F | translation initiation factor activity |
l=1-285 | F | translation initiation factor binding |
l=1-285 | P | formation of cytoplasmic translation initiation complex |
l=1-285 | P | formation of translation preinitiation complex |
m=1-108 | C | eukaryotic 43S preinitiation complex |
m=1-108 | C | multi-eIF complex |
m=1-108 | F | ribosomal small subunit binding |
m=1-108 | F | RNA binding |
m=1-108 | F | translation initiation factor activity |
m=1-108 | F | translation initiation factor binding |
m=1-108 | P | formation of translation preinitiation complex |
m=1-108 | P | maintenance of translational fidelity |
m=1-108 | P | regulation of translational fidelity |
O=1-137 | C | ribosome |
O=1-137 | F | structural constituent of ribosome |
O=1-137 | P | translation |
o=1-495 | C | cytoplasm |
o=1-495 | C | cytoplasmic stress granule |
o=1-495 | C | eukaryotic 43S preinitiation complex |
o=1-495 | C | eukaryotic 48S preinitiation complex |
o=1-495 | C | eukaryotic translation initiation factor 3 complex |
o=1-495 | C | eukaryotic translation initiation factor 3 complex, eIF3e |
o=1-495 | C | eukaryotic translation initiation factor 3 complex, eIF3m |
o=1-495 | C | incipient cellular bud site |
o=1-495 | C | multi-eIF complex |
o=1-495 | F | mRNA binding |
o=1-495 | F | translation initiation factor activity |
o=1-495 | P | formation of cytoplasmic translation initiation complex |
o=1-495 | P | translation reinitiation |
o=1-495 | P | translational initiation |
p=193-812 | C | cytoplasm |
p=193-812 | C | cytoplasmic stress granule |
p=193-812 | C | eukaryotic 43S preinitiation complex |
p=193-812 | C | eukaryotic 48S preinitiation complex |
p=193-812 | C | eukaryotic translation initiation factor 3 complex |
p=193-812 | C | multi-eIF complex |
p=193-812 | F | mRNA binding |
p=193-812 | F | translation initiation factor activity |
p=193-812 | F | translation initiation factor binding |
p=193-812 | P | formation of cytoplasmic translation initiation complex |
p=193-812 | P | translational initiation |
Q=1-143 | C | ribosome |
Q=1-143 | F | structural constituent of ribosome |
Q=1-143 | P | translation |
q=1-347 | C | cytoplasmic stress granule |
q=1-347 | C | eukaryotic 43S preinitiation complex |
q=1-347 | C | eukaryotic 48S preinitiation complex |
q=1-347 | C | eukaryotic translation initiation factor 3 complex |
q=1-347 | C | eukaryotic translation initiation factor 3 complex, eIF3m |
q=1-347 | C | multi-eIF complex |
q=1-347 | F | RNA binding |
q=1-347 | F | translation initiation factor activity |
q=1-347 | P | cytoplasmic translational initiation |
q=1-347 | P | formation of cytoplasmic translation initiation complex |
q=1-347 | P | positive regulation of ATPase activity |
q=1-347 | P | translation reinitiation |
q=1-347 | P | translational initiation |
r=704-734 | C | cytoplasmic stress granule |
r=704-734 | C | eukaryotic 43S preinitiation complex |
r=704-734 | C | eukaryotic 48S preinitiation complex |
r=704-734 | C | eukaryotic translation initiation factor 3 complex |
r=704-734 | C | multi-eIF complex |
r=704-734 | F | identical protein binding |
r=704-734 | F | translation initiation factor activity |
r=704-734 | F | translation initiation factor binding |
r=704-734 | P | cytoplasmic translational initiation |
r=704-734 | P | formation of cytoplasmic translation initiation complex |
r=704-734 | P | translational initiation |
s=45-96 | C | cytoplasmic stress granule |
s=45-96 | C | eukaryotic 43S preinitiation complex |
s=45-96 | C | eukaryotic 48S preinitiation complex |
s=45-96 | C | eukaryotic translation initiation factor 3 complex |
s=45-96 | C | multi-eIF complex |
s=45-96 | F | translation initiation factor activity |
s=45-96 | P | formation of cytoplasmic translation initiation complex |
s=45-96 | P | positive regulation of ATPase activity |
s=45-96 | P | translation reinitiation |
s=45-96 | P | translational initiation |
s=45-96 | P | translational termination |
V=1-87 | C | cytoplasm |
V=1-87 | C | ribosome |
V=1-87 | F | structural constituent of ribosome |
V=1-87 | P | rRNA processing |
V=1-87 | P | translation |
W=1-130 | C | ribosome |
W=1-130 | F | structural constituent of ribosome |
W=1-130 | P | translation |
Sequences
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3jap.pdb1.pdb:
[
download sequences in FASTA format
]
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A (protein):
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b (protein):
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C (protein):
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d (protein):
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E (protein):
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f (protein):
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g (protein):
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h (protein):
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i (protein):
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j (protein):
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k (protein):
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L (protein):
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M (protein):
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N (protein):
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O (protein):
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p (protein):
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Q (protein):
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r (protein):
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S (protein):
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T (protein):
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U (protein):
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V (protein):
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W (protein):
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X (protein):
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Y (protein):
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Z (protein):
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1 (rna):
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2 (rna):
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3 (rna):
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