General information
PDB ID 3PML
Title CRYSTAL STRUCTURE OF A POLYMERASE LAMBDA VARIANT WITH A DGTP ANALOG OPPOSITE A TEMPLATING T
PDB header LYASE,TRANSFERASE/DNA
Date 2010-11-17
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.6
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3pml.pdb AB CDEFGH 0
Biounits:
3pml.pdb1.pdb A CDH 1
3pml.pdb2.pdb B EFG 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B_palm Domain Q9UGP5_386-496 5.6e-35 1 CL0260 A 386 496 CH  S-Bb L-Bb 
DNA_pol_lambd_f Domain Q9UGP5_336-384 2.6e-21 1 CL0198 A 336 384 HC  H-Bb L-Bb 
HHH_8 Domain Q9UGP5_253-318 1e-18 1 CL0198 A 253 318 DC   
DNA_pol_B_palm Domain Q9UGP5_386-496 5.6e-35 1 CL0260 B 386 496 EF  S-Bb L-Bb 
DNA_pol_lambd_f Domain Q9UGP5_336-384 2.7e-21 1 CL0198 B 336 384 FE  H-Bb L-Bb 
HHH_8 Domain Q9UGP5_253-318 1e-18 1 CL0198 B 253 318 GE   
DNA_pol_B_thumb Family Q9UGP5_502-574 2.9e-22 1 No_clan A 502 574 CH  H-Bb H-Mn L-Bb 
DNA_pol_B_thumb Family Q9UGP5_502-574 3e-22 1 No_clan B 502 574 EF  H-Bb H-Mn L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=242-575 C nucleoplasm
A/B=242-575 C nucleus
A/B=242-575 F 5'-deoxyribose-5-phosphate lyase activity
A/B=242-575 F DNA binding
A/B=242-575 F DNA-directed DNA polymerase activity
A/B=242-575 F metal ion binding
A/B=242-575 P base-excision repair, gap-filling
A/B=242-575 P DNA biosynthetic process
A/B=242-575 P DNA replication
A/B=242-575 P double-strand break repair via homologous recombination
A/B=242-575 P double-strand break repair via nonhomologous end joining
A/B=242-575 P nucleotide-excision repair
A/B=242-575 P somatic hypermutation of immunoglobulin genes
Sequences
Download file with secondary structure created by Stride  
3pml.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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H (dna): 
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A (protein): 
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3pml.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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G (dna): 
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B (protein): 
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