General information
PDB ID 3AAF
Title STRUCTURE OF WRN RQC DOMAIN BOUND TO DOUBLE-STRANDED DNA
PDB header DNA BINDING PROTEIN/DNA
Date 2009-11-16
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.9
Kind dna
Organism HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3aaf.pdb AB CD 0
Biounits:
3aaf.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RQC Domain Q14191_956-1064 2.9e-20 1 CL0123 A 956 1061 CD  H-Bb S-Bb L-Bb L-Mj L-Mn 
RQC Domain Q14191_956-1064 2.9e-20 1 CL0123 B 956 1061 CD  H-Bb S-Bb L-Bb L-Mj L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=949-1079 C nucleolus
A/B=949-1079 C centrosome
A/B=949-1079 C nucleoplasm
A/B=949-1079 F ATP binding
A/B=949-1079 F ATP-dependent DNA helicase activity
A/B=949-1079 F magnesium ion binding
A/B=949-1079 F 3'-5' DNA helicase activity
A/B=949-1079 F 3'-5' exonuclease activity
A/B=949-1079 F ATP-dependent 3'-5' DNA helicase activity
A/B=949-1079 F G-quadruplex DNA binding
A/B=949-1079 F manganese ion binding
A/B=949-1079 F four-way junction helicase activity
A/B=949-1079 F Y-form DNA binding
A/B=949-1079 F bubble DNA binding
A/B=949-1079 P nucleolus to nucleoplasm transport
A/B=949-1079 P replicative cell aging
A/B=949-1079 P regulation of growth rate
A/B=949-1079 P DNA recombination
A/B=949-1079 P multicellular organismal aging
A/B=949-1079 P telomere maintenance
A/B=949-1079 P response to UV-C
A/B=949-1079 P positive regulation of hydrolase activity
A/B=949-1079 P response to oxidative stress
A/B=949-1079 P replication fork processing
A/B=949-1079 P base-excision repair
A/B=949-1079 P cell aging
A/B=949-1079 P DNA synthesis involved in DNA repair
A/B=949-1079 P regulation of apoptotic process
A/B=949-1079 P cellular response to starvation
Sequences
Download file with secondary structure created by Stride  
3aaf.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text