General information
PDB ID 3AAF
Title STRUCTURE OF WRN RQC DOMAIN BOUND TO DOUBLE-STRANDED DNA
PDB header DNA BINDING PROTEIN/DNA
Date 2009-11-16
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.9
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3aaf.pdb AB CD 0
Biounits:
3aaf.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RQC Domain Q14191_956-1064 1.3e-18 1 CL0123 A 956 1060 CD  H-Bb S-Bb L-Bb L-Mj L-Mn 
RQC Domain Q14191_956-1064 1.3e-18 1 CL0123 B 956 1060 CD  H-Bb S-Bb L-Bb L-Mj L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=949-1079 C centrosome
A/B=949-1079 C chromosome
A/B=949-1079 C chromosome, telomeric region
A/B=949-1079 C cytoplasm
A/B=949-1079 C neuron projection
A/B=949-1079 C nuclear speck
A/B=949-1079 C nucleolus
A/B=949-1079 C nucleoplasm
A/B=949-1079 C nucleus
A/B=949-1079 C replication fork
A/B=949-1079 F 3'-5' DNA helicase activity
A/B=949-1079 F 3'-5' exonuclease activity
A/B=949-1079 F 3'-flap-structured DNA binding
A/B=949-1079 F 8-hydroxy-2'-deoxyguanosine DNA binding
A/B=949-1079 F ATP binding
A/B=949-1079 F ATPase activity
A/B=949-1079 F bubble DNA binding
A/B=949-1079 F chromatin binding
A/B=949-1079 F DNA binding
A/B=949-1079 F DNA helicase activity
A/B=949-1079 F exonuclease activity
A/B=949-1079 F forked DNA-dependent helicase activity
A/B=949-1079 F four-way junction DNA binding
A/B=949-1079 F four-way junction helicase activity
A/B=949-1079 F G-quadruplex DNA binding
A/B=949-1079 F helicase activity
A/B=949-1079 F magnesium ion binding
A/B=949-1079 F manganese ion binding
A/B=949-1079 F MutLalpha complex binding
A/B=949-1079 F protein homodimerization activity
A/B=949-1079 F protein-containing complex binding
A/B=949-1079 F telomeric D-loop binding
A/B=949-1079 F telomeric G-quadruplex DNA binding
A/B=949-1079 F Y-form DNA binding
A/B=949-1079 P aging
A/B=949-1079 P base-excision repair
A/B=949-1079 P brain development
A/B=949-1079 P cell aging
A/B=949-1079 P cellular response to DNA damage stimulus
A/B=949-1079 P cellular response to gamma radiation
A/B=949-1079 P cellular response to starvation
A/B=949-1079 P DNA duplex unwinding
A/B=949-1079 P DNA metabolic process
A/B=949-1079 P DNA recombination
A/B=949-1079 P DNA repair
A/B=949-1079 P DNA replication
A/B=949-1079 P DNA synthesis involved in DNA repair
A/B=949-1079 P DNA unwinding involved in DNA replication
A/B=949-1079 P double-strand break repair
A/B=949-1079 P double-strand break repair via homologous recombination
A/B=949-1079 P G-quadruplex DNA unwinding
A/B=949-1079 P multicellular organism aging
A/B=949-1079 P positive regulation of hydrolase activity
A/B=949-1079 P positive regulation of strand invasion
A/B=949-1079 P protein localization to nucleolus
A/B=949-1079 P regulation of apoptotic process
A/B=949-1079 P regulation of growth rate
A/B=949-1079 P regulation of signal transduction by p53 class mediator
A/B=949-1079 P replication fork processing
A/B=949-1079 P replicative cell aging
A/B=949-1079 P response to oxidative stress
A/B=949-1079 P response to UV-C
A/B=949-1079 P t-circle formation
A/B=949-1079 P telomere maintenance
A/B=949-1079 P telomeric D-loop disassembly
Sequences
Download file with secondary structure created by Stride  
3aaf.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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