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Composition of PDB entry and biounits
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File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
PDB entry: | |||||
pdb3aoi.pdb | ABCDEFGHIJKLMNOXYZ | PRT | QSU | 0 |
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Biounits: | |||||
3aoi.pdb1.pdb | ABCDEX | P | Q | 1 |
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3aoi.pdb2.pdb | FGHIJY | R | S | 1 |
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3aoi.pdb3.pdb | KLMNOZ | T | U | 1 |
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Pfam domains
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Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Domain | Q5SHR6_52-180 | 1.7e-25 | 1 | No_clan | A | 52 | 180 |
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Domain | Q5SHR6_26-222 | 1.6e-24 | 1 |
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A | 26 | 222 |
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Domain | Q5SHR6_52-180 | 1.7e-25 | 1 | No_clan | B | 52 | 180 |
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Domain | Q5SHR6_26-222 | 1.6e-24 | 1 |
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B | 26 | 222 |
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Domain | Q8RQE9_596-1026 | 7.1e-137 | 1 |
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C | 596 | 1026 | PQ |
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Domain | Q8RQE9_393-461 | 3.9e-29 | 1 | No_clan | C | 393 | 461 | Q |
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Domain | Q8RQE9_1028-1104 | 5e-26 | 1 | No_clan | C | 1028 | 1104 | P |
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Domain | Q8RQE9_471-535 | 1.2e-24 | 1 | No_clan | C | 471 | 535 |
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Domain | Q8RQE9_142-334 | 5.5e-11 | 1 | No_clan | C | 142 | 334 |
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Domain | 1.2e-62 | 1 | No_clan | D | 2 | 618 |
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Domain | Q8RQE8_620-765 | 1e-35 | 1 | No_clan | D | 620 | 765 | QP |
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Domain | Q8RQE8_1064-1296 | 8.7e-33 | 1 | No_clan | D | 1064 | 1254 | P |
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Domain | Q8RQE8_768-954 | 7.4e-29 | 1 | No_clan | D | 768 | 954 |
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Domain | Q8RQE8_1266-1432 | 4.6e-14 | 1 | No_clan | D | 1256 | 1432 |
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Domain | Q8RQE8_983-1069 | 8.7e-14 | 1 | No_clan | D | 983 | 1068 |
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Domain | Q5SHR6_52-180 | 1.7e-25 | 1 | No_clan | F | 52 | 180 |
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Domain | Q5SHR6_26-222 | 1.6e-24 | 1 |
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F | 26 | 222 |
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Domain | Q5SHR6_52-180 | 1.7e-25 | 1 | No_clan | G | 52 | 180 |
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Domain | Q5SHR6_26-222 | 1.6e-24 | 1 |
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G | 26 | 222 |
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Domain | Q8RQE9_596-1026 | 1e-135 | 1 |
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H | 596 | 1026 | S |
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Domain | Q8RQE9_393-461 | 3.9e-29 | 1 | No_clan | H | 393 | 461 |
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Domain | Q8RQE9_1028-1104 | 5e-26 | 1 | No_clan | H | 1028 | 1104 |
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Domain | Q8RQE9_471-535 | 1.2e-24 | 1 | No_clan | H | 471 | 535 |
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Domain | Q8RQE9_142-334 | 5.5e-11 | 1 | No_clan | H | 142 | 334 |
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Domain | 5.5e-61 | 1 | No_clan | I | 2 | 618 | S |
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Domain | Q8RQE8_620-765 | 9.5e-36 | 1 | No_clan | I | 620 | 765 | S |
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Domain | Q8RQE8_1064-1296 | 3.2e-35 | 1 | No_clan | I | 1064 | 1288 |
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Domain | Q8RQE8_768-954 | 6.9e-29 | 1 | No_clan | I | 768 | 954 |
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Domain | Q8RQE8_1266-1432 | 4.3e-14 | 1 | No_clan | I | 1256 | 1432 |
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Domain | Q8RQE8_983-1069 | 8.3e-14 | 1 | No_clan | I | 983 | 1068 |
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Domain | Q5SHR6_52-180 | 1.7e-25 | 1 | No_clan | K | 52 | 180 |
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Domain | Q5SHR6_26-222 | 1.7e-24 | 1 |
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K | 26 | 222 |
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Domain | Q5SHR6_52-180 | 1.7e-25 | 1 | No_clan | L | 52 | 180 |
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Domain | Q5SHR6_26-222 | 1.6e-24 | 1 |
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L | 26 | 222 |
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Domain | Q8RQE9_596-1026 | 2.1e-138 | 1 |
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M | 596 | 1026 | U |
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Domain | Q8RQE9_393-461 | 3.9e-29 | 1 | No_clan | M | 393 | 461 | UT |
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Domain | Q8RQE9_1028-1104 | 5e-26 | 1 | No_clan | M | 1028 | 1104 |
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Domain | Q8RQE9_471-535 | 1.2e-24 | 1 | No_clan | M | 471 | 535 |
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Domain | Q8RQE9_142-334 | 5.5e-11 | 1 | No_clan | M | 142 | 334 |
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Domain | 1.7e-64 | 1 | No_clan | N | 3 | 618 |
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Domain | Q8RQE8_620-765 | 1e-35 | 1 | No_clan | N | 620 | 765 | U |
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Domain | Q8RQE8_1064-1296 | 8.8e-33 | 1 | No_clan | N | 1064 | 1254 |
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Domain | Q8RQE8_768-954 | 7.5e-29 | 1 | No_clan | N | 768 | 954 |
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Domain | Q8RQE8_1266-1432 | 4.6e-14 | 1 | No_clan | N | 1256 | 1432 |
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Domain | Q8RQE8_983-1069 | 8.8e-14 | 1 | No_clan | N | 983 | 1068 |
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Domain | Q5SJG6_78-156 | 7.9e-20 | 1 |
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X | 78 | 156 |
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Domain | Q5SJG6_5-74 | 3.7e-16 | 1 | No_clan | X | 5 | 74 |
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Domain | Q5SJG6_78-156 | 7.6e-20 | 1 |
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Y | 78 | 156 |
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Domain | Q5SJG6_5-74 | 3.6e-16 | 1 | No_clan | Y | 5 | 74 |
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Domain | Q5SJG6_78-156 | 7.6e-20 | 1 |
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Z | 78 | 156 |
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Domain | Q5SJG6_5-74 | 3.6e-16 | 1 | No_clan | Z | 5 | 74 |
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Family | Q8RQE9_17-380 | 4.3e-38 | 1 | No_clan | C | 17 | 380 |
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Family | Q8RQE7_8-75 | 3.4e-07 | 1 | No_clan | E | 8 | 75 |
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Family | Q8RQE9_17-380 | 4.2e-38 | 1 | No_clan | H | 17 | 380 |
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Family | Q8RQE7_8-75 | 3.4e-07 | 1 | No_clan | J | 8 | 75 |
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Family | Q8RQE9_17-380 | 4.3e-38 | 1 | No_clan | M | 17 | 380 |
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Family | Q8RQE7_8-75 | 3.4e-07 | 1 | No_clan | O | 8 | 75 |
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SCOP domains
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No SCOP domains | |||||||
GO terms | ||
Protein chains: | GO type: | GO description: |
A/B/F/G/K/L=1-315 | P | DNA repair |
C/H/M=1-1119 | F | DNA-directed RNA polymerase activity |
C/H/M=1-1119 | F | DNA binding |
C/H/M=1-1119 | F | ribonucleoside binding |
C/H/M=1-1119 | P | transcription, DNA-dependent |
E/J/O=1-99 | C | RNA polymerase complex |
Sequences
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3aoi.pdb1.pdb:
[
download sequences in FASTA format
]
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P (dna):
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A (protein):
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B (protein):
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C (protein):
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D (protein):
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E (protein):
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X (protein):
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Q (rna):
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3aoi.pdb2.pdb:
[
download sequences in FASTA format
]
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R (dna):
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F (protein):
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G (protein):
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H (protein):
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I (protein):
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J (protein):
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Y (protein):
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S (rna):
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3aoi.pdb3.pdb:
[
download sequences in FASTA format
]
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T (dna):
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K (protein):
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L (protein):
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M (protein):
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N (protein):
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O (protein):
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Z (protein):
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U (rna):
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