General information
PDB ID 3AOI
Title RNA POLYMERASE-GFH1 COMPLEX (CRYSTAL TYPE 2)
PDB header TRANSCRIPTION, TRANSFERASE/DNA/RNA
Date 2010-09-30
Experimental method X-RAY DIFFRACTION
Resolution (A) 4.3
Kind hybrid
Organism THERMUS THERMOPHILUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3aoi.pdb ABCDEFGHIJKLMNOXYZ PRT QSU 0
Biounits:
3aoi.pdb1.pdb ABCDEX P Q 1
3aoi.pdb2.pdb FGHIJY R S 1
3aoi.pdb3.pdb KLMNOZ T U 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain Q5SHR6_52-180 1.7e-25 1 No_clan A 52 180   
RNA_pol_L Domain Q5SHR6_26-222 1.6e-24 1 CL0509 A 26 222   
RNA_pol_A_bac Domain Q5SHR6_52-180 1.7e-25 1 No_clan B 52 180   
RNA_pol_L Domain Q5SHR6_26-222 1.6e-24 1 CL0509 B 26 222   
RNA_pol_Rpb2_6 Domain Q8RQE9_596-1026 7.1e-137 1 CL0410 C 596 1026 PQ   
RNA_pol_Rpb2_3 Domain Q8RQE9_393-461 3.9e-29 1 No_clan C 393 461 Q   
RNA_pol_Rpb2_7 Domain Q8RQE9_1028-1104 5e-26 1 No_clan C 1028 1104 P   
RNA_pol_Rpb2_45 Domain Q8RQE9_471-535 1.2e-24 1 No_clan C 471 535   
RNA_pol_Rpb2_2 Domain Q8RQE9_142-334 0.000000000055 1 No_clan C 142 334   
RNA_pol_Rpb1_1 Domain 1.2e-62 1 No_clan D 2 618
RNA_pol_Rpb1_2 Domain Q8RQE8_620-765 1e-35 1 No_clan D 620 765 QP   
RNA_pol_Rpb1_5 Domain Q8RQE8_1064-1296 8.7e-33 1 No_clan D 1064 1254 P   
RNA_pol_Rpb1_3 Domain Q8RQE8_768-954 7.4e-29 1 No_clan D 768 954   
RNA_pol_Rpb1_5 Domain Q8RQE8_1266-1432 0.000000000000046 1 No_clan D 1256 1432   
RNA_pol_Rpb1_4 Domain Q8RQE8_983-1069 0.000000000000087 1 No_clan D 983 1068   
RNA_pol_A_bac Domain Q5SHR6_52-180 1.7e-25 1 No_clan F 52 180   
RNA_pol_L Domain Q5SHR6_26-222 1.6e-24 1 CL0509 F 26 222   
RNA_pol_A_bac Domain Q5SHR6_52-180 1.7e-25 1 No_clan G 52 180   
RNA_pol_L Domain Q5SHR6_26-222 1.6e-24 1 CL0509 G 26 222   
RNA_pol_Rpb2_6 Domain Q8RQE9_596-1026 1e-135 1 CL0410 H 596 1026 S   
RNA_pol_Rpb2_3 Domain Q8RQE9_393-461 3.9e-29 1 No_clan H 393 461   
RNA_pol_Rpb2_7 Domain Q8RQE9_1028-1104 5e-26 1 No_clan H 1028 1104   
RNA_pol_Rpb2_45 Domain Q8RQE9_471-535 1.2e-24 1 No_clan H 471 535   
RNA_pol_Rpb2_2 Domain Q8RQE9_142-334 0.000000000055 1 No_clan H 142 334   
RNA_pol_Rpb1_1 Domain 5.5e-61 1 No_clan I 2 618 S
RNA_pol_Rpb1_2 Domain Q8RQE8_620-765 9.5e-36 1 No_clan I 620 765 S   
RNA_pol_Rpb1_5 Domain Q8RQE8_1064-1296 3.2e-35 1 No_clan I 1064 1288   
RNA_pol_Rpb1_3 Domain Q8RQE8_768-954 6.9e-29 1 No_clan I 768 954   
RNA_pol_Rpb1_5 Domain Q8RQE8_1266-1432 0.000000000000043 1 No_clan I 1256 1432   
RNA_pol_Rpb1_4 Domain Q8RQE8_983-1069 0.000000000000083 1 No_clan I 983 1068   
RNA_pol_A_bac Domain Q5SHR6_52-180 1.7e-25 1 No_clan K 52 180   
RNA_pol_L Domain Q5SHR6_26-222 1.7e-24 1 CL0509 K 26 222   
RNA_pol_A_bac Domain Q5SHR6_52-180 1.7e-25 1 No_clan L 52 180   
RNA_pol_L Domain Q5SHR6_26-222 1.6e-24 1 CL0509 L 26 222   
RNA_pol_Rpb2_6 Domain Q8RQE9_596-1026 2.1e-138 1 CL0410 M 596 1026 U   
RNA_pol_Rpb2_3 Domain Q8RQE9_393-461 3.9e-29 1 No_clan M 393 461 UT   
RNA_pol_Rpb2_7 Domain Q8RQE9_1028-1104 5e-26 1 No_clan M 1028 1104   
RNA_pol_Rpb2_45 Domain Q8RQE9_471-535 1.2e-24 1 No_clan M 471 535   
RNA_pol_Rpb2_2 Domain Q8RQE9_142-334 0.000000000055 1 No_clan M 142 334   
RNA_pol_Rpb1_1 Domain 1.7e-64 1 No_clan N 3 618
RNA_pol_Rpb1_2 Domain Q8RQE8_620-765 1e-35 1 No_clan N 620 765 U   
RNA_pol_Rpb1_5 Domain Q8RQE8_1064-1296 8.8e-33 1 No_clan N 1064 1254   
RNA_pol_Rpb1_3 Domain Q8RQE8_768-954 7.5e-29 1 No_clan N 768 954   
RNA_pol_Rpb1_5 Domain Q8RQE8_1266-1432 0.000000000000046 1 No_clan N 1256 1432   
RNA_pol_Rpb1_4 Domain Q8RQE8_983-1069 0.000000000000088 1 No_clan N 983 1068   
GreA_GreB Domain Q5SJG6_78-156 7.9e-20 1 CL0487 X 78 156   
GreA_GreB_N Domain Q5SJG6_5-74 3.7e-16 1 No_clan X 5 74   
GreA_GreB Domain Q5SJG6_78-156 7.6e-20 1 CL0487 Y 78 156   
GreA_GreB_N Domain Q5SJG6_5-74 3.6e-16 1 No_clan Y 5 74   
GreA_GreB Domain Q5SJG6_78-156 7.6e-20 1 CL0487 Z 78 156   
GreA_GreB_N Domain Q5SJG6_5-74 3.6e-16 1 No_clan Z 5 74   
RNA_pol_Rpb2_1 Family Q8RQE9_17-380 4.3e-38 1 No_clan C 17 380   
RNA_pol_Rpb6 Family Q8RQE7_8-75 0.00000034 1 No_clan E 8 75   
RNA_pol_Rpb2_1 Family Q8RQE9_17-380 4.2e-38 1 No_clan H 17 380   
RNA_pol_Rpb6 Family Q8RQE7_8-75 0.00000034 1 No_clan J 8 75   
RNA_pol_Rpb2_1 Family Q8RQE9_17-380 4.3e-38 1 No_clan M 17 380   
RNA_pol_Rpb6 Family Q8RQE7_8-75 0.00000034 1 No_clan O 8 75   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/F/G/K/L=1-315 P DNA repair
C/H/M=1-1119 F DNA-directed RNA polymerase activity
C/H/M=1-1119 F DNA binding
C/H/M=1-1119 F ribonucleoside binding
C/H/M=1-1119 P transcription, DNA-dependent
E/J/O=1-99 C RNA polymerase complex
Sequences
Download file with secondary structure created by Stride  
3aoi.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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X (protein): 
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Q (rna): 
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3aoi.pdb2.pdb:   [ download sequences in FASTA format ]
R (dna): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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Y (protein): 
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S (rna): 
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3aoi.pdb3.pdb:   [ download sequences in FASTA format ]
T (dna): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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Z (protein): 
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U (rna): 
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