General information
PDB ID 3AV2
Title THE HUMAN NUCLEOSOME STRUCTURE CONTAINING THE HISTONE VARIANT H3.3
PDB header STRUCTURAL PROTEIN/DNA
Date 2011-02-18
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind dna
Organism HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3av2.pdb ABCDEFGH IJ 0
Biounits:
3av2.pdb1.pdb ABCDEFGH IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84243_39-132 1.2e-45 1 CL0012 A 38 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62805_26-99 0.0000000085 1 CL0012 B 26 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P04908_16-91 3.8e-16 1 CL0012 C 14 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06899_33-102 4.8e-22 1 CL0012 D 31 101 IJ  H-Bb H-Mj S-Bb L-Bb 
Histone Domain P84243_39-132 1.2e-45 1 CL0012 E 38 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62805_19-99 0.0000000099 1 CL0012 F 24 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P04908_16-91 4.2e-16 1 CL0012 G 15 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06899_33-102 1.3e-21 1 CL0012 H 33 101 IJ  H-Bb L-Bb 
Histone_H2A_C Family P04908_92-119 1.5e-17 1 No_clan C 91 118   
Histone_H2A_C Family P04908_92-119 1.4e-17 1 No_clan G 91 118   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=1-136 C nucleoplasm
A/E=1-136 C extracellular region
A/E=1-136 P blood coagulation
B/F=1-103 P phosphatidylinositol-mediated signaling
B/F=1-103 P telomere maintenance
B/F=1-103 P negative regulation of megakaryocyte differentiation
B/F=1-103 P CenH3-containing nucleosome assembly at centromere
C/G=1-130 C nucleosome
C/G=1-130 C nucleus
C/G=1-130 F DNA binding
C/G=1-130 P nucleosome assembly
D/H=1-126 P defense response to bacterium
Sequences
Download file with secondary structure created by Stride  
3av2.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
Click "SHOW" for view sequence
J (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text