General information
PDB ID 3B6F
Title NUCLEOSOME CORE PARTICLE TREATED WITH CISPLATIN
PDB header STRUCTURAL PROTEIN/DNA
Date 2007-10-29
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.45
Kind dna
Organism XENOPUS LAEVIS, HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3b6f.pdb ABCDEFGH IJ 0
Biounits:
3b6f.pdb1.pdb ABCDEFGH IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_34-132 3.7e-47 1 CL0012 A 33 131 IJ   
CENP-T_C Domain P62799_26-99 0.0000000089 1 CL0012 B 26 98 IJ   
Histone Domain P06897_13-91 9.1e-16 1 CL0012 C 15 90 IJ   
Histone Domain P02281_28-102 4.6e-23 1 CL0012 D 22 98 IJ   
Histone Domain P84233_34-132 3.2e-47 1 CL0012 E 31 131 IJ   
CENP-T_C Domain P62799_18-99 0.00000001 1 CL0012 F 20 98 IJ   
Histone Domain P06897_13-91 6.5e-16 1 CL0012 G 13 90 IJ   
Histone Domain P02281_28-102 7.3e-23 1 CL0012 H 24 98 IJ   
Histone_H2A_C Family P06897_92-120 5.1e-19 1 No_clan C 91 120   
Histone_H2A_C Family P06897_92-126 2.2e-19 1 No_clan G 91 121   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H3 A 33 135 IJ  H-Bb L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H4 B 24 102 IJ  S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2A C 15 118 IJ  H-Bb S-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2B D 22 122 IJ  L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H3 E 33 135 IJ  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H4 F 24 102 IJ  S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2A G 15 118 IJ  H-Bb S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2B H 24 122 IJ  L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A/E=2-136 C nucleus
A/E=2-136 C nucleosome
A/E=2-136 F DNA binding
A/E=2-136 P nucleosome assembly
Sequences
Download file with secondary structure created by Stride  
3b6f.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
Click "SHOW" for view sequence
J (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text