General information
PDB ID 3BEP
Title STRUCTURE OF A SLIDING CLAMP ON DNA
PDB header TRANSFERASE, TRANSCRIPTION/DNA
Date 2007-11-19
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.92
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3bep.pdb AB CD 0
Biounits:
3bep.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol3_beta_3 Domain P0A988_245-365 1.3e-45 1 CL0060 A 245 365   
DNA_pol3_beta_2 Domain P0A988_129-243 6.9e-41 1 CL0060 A 129 243   
DNA_pol3_beta Domain P0A988_1-120 8.1e-41 1 CL0060 A 1 120 D   
DNA_pol3_beta_3 Domain P0A988_245-365 1.3e-45 1 CL0060 B 245 365   
DNA_pol3_beta_2 Domain P0A988_129-243 6.9e-41 1 CL0060 B 129 243 C   
DNA_pol3_beta Domain P0A988_1-120 8.1e-41 1 CL0060 B 1 120 D   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: DNA clamp
    Superfamily: DNA clamp
      Family: DNA polymerase III, beta subunit
DNA polymerase III, beta subunit A 1 122 D -
Class: Alpha and beta proteins (a+b)
  Fold: DNA clamp
    Superfamily: DNA clamp
      Family: DNA polymerase III, beta subunit
DNA polymerase III, beta subunit A 123 244 -
Class: Alpha and beta proteins (a+b)
  Fold: DNA clamp
    Superfamily: DNA clamp
      Family: DNA polymerase III, beta subunit
DNA polymerase III, beta subunit A 245 366 -
Class: Alpha and beta proteins (a+b)
  Fold: DNA clamp
    Superfamily: DNA clamp
      Family: DNA polymerase III, beta subunit
DNA polymerase III, beta subunit B 1 122 D -
Class: Alpha and beta proteins (a+b)
  Fold: DNA clamp
    Superfamily: DNA clamp
      Family: DNA polymerase III, beta subunit
DNA polymerase III, beta subunit B 123 244 C -
Class: Alpha and beta proteins (a+b)
  Fold: DNA clamp
    Superfamily: DNA clamp
      Family: DNA polymerase III, beta subunit
DNA polymerase III, beta subunit B 245 366 -
GO terms
Protein chains: GO type: GO description:
A/B=1-366 C cytosol
A/B=1-366 C DNA polymerase III complex
A/B=1-366 F DNA-directed DNA polymerase activity
A/B=1-366 F DNA binding
A/B=1-366 F 3'-5' exonuclease activity
A/B=1-366 P DNA strand elongation involved in DNA replication
A/B=1-366 P response to DNA damage stimulus
Sequences
Download file with secondary structure created by Stride  
3bep.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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