General information
PDB ID 3BRD
Title CSL (LAG-1) BOUND TO DNA WITH LIN-12 RAM PEPTIDE, P212121
PDB header DNA BINDING PROTEIN/DNA
Date 2007-12-21
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.21
Kind dna
Organism CAENORHABDITIS ELEGANS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3brd.pdb AD BC 0
Biounits:
3brd.pdb1.pdb AD BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
BTD Domain Q8MXE7_382-534 3.6e-74 1 CL0066 A 384 536 BC  H-Bb L-Bb L-Mn 
LAG1-DNAbind Domain Q8MXE7_215-378 4.8e-43 1 CL0073 A 217 384 BC  L-Bb L-Mj 
TIG Domain 0.000083 1 CL0159 A 571 658
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: E set domains
      Family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
DNA-binding protein LAG-1 (CSL) A 542 660 -
Class: All beta proteins
  Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
    Superfamily: p53-like transcription factors
      Family: DNA-binding protein LAG-1 (CSL)
DNA-binding protein LAG-1 (CSL) A 197 380 BC  L-Bb L-Mj 
Class: All beta proteins
  Fold: beta-Trefoil
    Superfamily: DNA-binding protein LAG-1 (CSL)
      Family: DNA-binding protein LAG-1 (CSL)
DNA-binding protein LAG-1 (CSL) A 381 541 BC  H-Bb L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
D=930-957 C integral to membrane
D=930-957 C apical plasma membrane
D=930-957 F calcium ion binding
D=930-957 F transmembrane signaling receptor activity
D=930-957 P cell fate specification
D=930-957 P cell-cell signaling involved in cell fate commitment
D=930-957 P vulval development
D=930-957 P hermaphrodite genitalia development
D=930-957 P embryo development ending in birth or egg hatching
D=930-957 P dauer exit
D=930-957 P locomotion
D=930-957 P oviposition
D=930-957 P Notch signaling pathway
Sequences
Download file with secondary structure created by Stride  
3brd.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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D (protein): 
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