General information
PDB ID 3BRF
Title CSL (LAG-1) BOUND TO DNA WITH LIN-12 RAM PEPTIDE, C2221
PDB header DNA BINDING PROTEIN/DNA
Date 2007-12-21
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.47
Kind dna
Organism CAENORHABDITIS ELEGANS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3brf.pdb AD BC 0
Biounits:
3brf.pdb1.pdb AD BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
BTD Domain 1.1e-55 1 CL0066 A 411 536 B
LAG1-DNAbind Domain 3.6e-39 1 CL0073 A 217 382 BC
TIG_SUH Domain 2.5e-26 1 CL0159 A 562 658
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: E set domains
      Family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
DNA-binding protein LAG-1 (CSL) A 542 660 -
Class: All beta proteins
  Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
    Superfamily: p53-like transcription factors
      Family: DNA-binding protein LAG-1 (CSL)
DNA-binding protein LAG-1 (CSL) A 197 380 BC  L-Bb L-Mj 
Class: All beta proteins
  Fold: beta-Trefoil
    Superfamily: DNA-binding protein LAG-1 (CSL)
      Family: DNA-binding protein LAG-1 (CSL)
DNA-binding protein LAG-1 (CSL) A 381 541 BC  S-Bb L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
D=938-950 C apical plasma membrane
D=938-950 C integral component of membrane
D=938-950 C nucleus
D=938-950 C plasma membrane
D=938-950 C RNA polymerase II transcription regulator complex
D=938-950 F calcium ion binding
D=938-950 F Notch binding
D=938-950 F RNA polymerase II transcription factor binding
D=938-950 F transmembrane signaling receptor activity
D=938-950 P cell fate specification
D=938-950 P cell-cell signaling involved in cell fate commitment
D=938-950 P dauer exit
D=938-950 P nematode larval development
D=938-950 P Notch signaling pathway
D=938-950 P oviposition
D=938-950 P positive regulation of mesodermal cell fate specification
D=938-950 P regulation of cell fate specification
D=938-950 P regulation of mesodermal cell fate specification
D=938-950 P regulation of vulval development
D=938-950 P vulval development
Sequences
Download file with secondary structure created by Stride  
3brf.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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D (protein): 
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