General information
PDB ID 3C2K
Title DNA POLYMERASE BETA WITH A GAPPED DNA SUBSTRATE AND DUMPNPP WITH MANGANESE IN THE ACTIVE SITE
PDB header TRANSFERASE/DNA
Date 2008-01-25
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.4
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3c2k.pdb A TPD 0
Biounits:
3c2k.pdb1.pdb A TPD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B_palm Domain P06746_149-262 1.1e-39 1 CL0260 A 149 262 PT  S-Bb S-Mn L-Bb 
DNA_pol_lambd_f Domain P06746_98-147 4.5e-19 1 CL0198 A 98 147 PT  H-Bb L-Bb 
HHH_8 Domain P06746_12-78 3.7e-18 1 CL0198 A 12 78 DT   
DNA_pol_B_thumb Family P06746_268-334 1.7e-17 1 No_clan A 268 334 PT  H-Bb H-Mn S-Bb L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: DNA polymerase beta, N-terminal domain-like
      Family: DNA polymerase beta, N-terminal domain-like
DNA polymerase beta, N-terminal (8 kD)-domain A 10 91 DT  H-Bb L-Bb 
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: PsbU/PolX domain-like
      Family: DNA polymerase beta-like, second domain
DNA polymerase beta A 92 148 PT -
Class: Alpha and beta proteins (a+b)
  Fold: Nucleotidyltransferase
    Superfamily: Nucleotidyltransferase
      Family: DNA polymerase beta-like
DNA polymerase beta, catalytic (31 kD) fragment A 149 335 PT -
GO terms
Protein chains: GO type: GO description:
A=1-335 C nucleoplasm
A=1-335 C spindle microtubule
A=1-335 C cytoplasm
A=1-335 F DNA-directed DNA polymerase activity
A=1-335 F damaged DNA binding
A=1-335 F metal ion binding
A=1-335 F lyase activity
A=1-335 P cell death
A=1-335 P response to ethanol
A=1-335 P base-excision repair
A=1-335 P pyrimidine dimer repair
A=1-335 P DNA-dependent DNA replication
A=1-335 P anti-apoptosis
Sequences
Download file with secondary structure created by Stride  
3c2k.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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P (dna): 
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T (dna): 
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A (protein): 
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