General information
PDB ID 3C5F
Title STRUCTURE OF A BINARY COMPLEX OF THE R517A POL LAMBDA MUTANT
PDB header TRANSFERASE, LYASE/DNA
Date 2008-01-31
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.25
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3c5f.pdb AB TPDUQE 2
Biounits:
3c5f.pdb1.pdb A TPD 1
3c5f.pdb2.pdb B UQE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B_palm Domain Q9UGP5_386-496 6.9e-36 1 CL0260 A 386 496 PT   
DNA_pol_lambd_f Domain Q9UGP5_336-384 5.6e-21 1 CL0198 A 336 384 PT   
HHH_8 Domain Q9UGP5_253-318 2.6e-18 1 CL0198 A 253 318 DT   
DNA_pol_B_palm Domain Q9UGP5_386-496 6.9e-36 1 CL0260 B 386 496 QU   
DNA_pol_lambd_f Domain Q9UGP5_336-384 5.6e-21 1 CL0198 B 336 384 Q   
HHH_8 Domain Q9UGP5_253-318 2.6e-18 1 CL0198 B 253 318 EU   
DNA_pol_B_thumb Family Q9UGP5_502-574 2e-20 1 No_clan A 502 574 TP   
DNA_pol_B_thumb Family Q9UGP5_502-574 2e-20 1 No_clan B 502 574 UQ   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: DNA polymerase beta, N-terminal domain-like
      Family: DNA polymerase beta, N-terminal domain-like
DNA polymerase lambda A 250 327 DT -
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: PsbU/PolX domain-like
      Family: DNA polymerase beta-like, second domain
DNA polymerase lambda A 329 385 PT -
Class: Alpha and beta proteins (a+b)
  Fold: Nucleotidyltransferase
    Superfamily: Nucleotidyltransferase
      Family: DNA polymerase beta-like
DNA polymerase lambda A 386 575 PT -
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: DNA polymerase beta, N-terminal domain-like
      Family: DNA polymerase beta, N-terminal domain-like
DNA polymerase lambda B 250 327 EU -
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: PsbU/PolX domain-like
      Family: DNA polymerase beta-like, second domain
DNA polymerase lambda B 329 385 Q -
Class: Alpha and beta proteins (a+b)
  Fold: Nucleotidyltransferase
    Superfamily: Nucleotidyltransferase
      Family: DNA polymerase beta-like
DNA polymerase lambda B 386 575 QU -
GO terms
Protein chains: GO type: GO description:
A/B=242-575 C nucleus
A/B=242-575 F DNA binding
A/B=242-575 F lyase activity
A/B=242-575 F DNA-directed DNA polymerase activity
A/B=242-575 F metal ion binding
A/B=242-575 P nucleotide-excision repair
A/B=242-575 P somatic hypermutation of immunoglobulin genes
A/B=242-575 P DNA replication
Sequences
Download file with secondary structure created by Stride  
3c5f.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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P (dna): 
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T (dna): 
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A (protein): 
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3c5f.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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Q (dna): 
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U (dna): 
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B (protein): 
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