General information
PDB ID 3CCS
Title STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION G2482A
PDB header RIBOSOME
Date 2008-02-26
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.95
Kind rna
Organism HALOARCULA MARISMORTUI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3ccs.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZ123 09 0
Biounits:
3ccs.pdb1.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZ123 09 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L2_C Domain P20276_90-225 4.9e-46 1 CL0107 A 89 224 0   
Ribosomal_L2 Domain P20276_11-83 3.2e-17 1 CL0021 A 10 82 0   
Ribosomal_L5 Domain P14124_12-65 5e-16 1 CL0652 D 11 64 9   
Ribosomal_L5_C Domain P14124_69-166 0.000000038 1 No_clan D 68 152 09   
Ribosomal_L6 Domain P14135_8-80 0.0000000000000058 1 No_clan E 7 79 0   
Ribosomal_L6 Domain P14135_92-166 0.000000000000097 1 No_clan E 91 165 0   
Ribosomal_L7Ae Domain P12743_15-108 2.3e-25 1 CL0101 F 14 108 0   
Ribosomal_L11 Domain P14122_67-135 2.6e-20 1 No_clan I 67 134 0   
Ribosomal_L14 Domain P22450_12-132 4.8e-36 1 No_clan K 12 132 0   
Ribosomal_L22 Domain P10970_17-149 7.2e-25 1 No_clan R 16 148 0   
Ribosomal_L30 Domain P14121_2-52 0.000000000073 1 No_clan W 2 52 0   
Ribosomal_L37e Family P32410_3-56 1.9e-22 1 CL0167 1 2 55 0   
Ribosomal_L39 Family P22452_8-49 0.0000000000000019 1 No_clan 2 7 48 0   
Ribosomal_L44 Family P32411_16-91 1.1e-25 1 CL0167 3 16 91 0   
Ribosomal_L3 Family P20279_2-338 1.2e-109 1 CL0575 B 1 337 0   
Ribosomal_L4 Family P12735_16-246 1.4e-40 1 No_clan C 16 246 0   
Ribosomal_L16 Family P60617_12-166 3.4e-24 1 No_clan H 12 167 09   
Ribosomal_L13 Family P29198_10-114 0.0000068 1 No_clan J 10 114 0   
Ribosomal_L27A Family P12737_25-143 9.4e-18 1 CL0588 L 24 142 0   
Ribosomal_L15e Family P60618_4-191 1.5e-78 1 CL0652 M 3 190 0   
Ribosomal_L5e Family P14123_5-100 6e-17 1 CL0267 N 4 99 09   
Ribosomal_L5e Family P14123_92-133 0.00000023 1 CL0267 N 91 132 0   
Ribosomal_L18 Family 0.0000086 0 CL0588 O 1 115 0
Ribosomal_L19e Family P14119_3-144 6.6e-56 1 No_clan P 2 143 0   
Ribosomal_L21e Family P12734_2-96 6.6e-26 1 CL0107 Q 2 94 09   
Ribosomal_L23 Family P12732_4-77 0.0000000000000011 1 No_clan S 3 76 0   
Ribosomal_L26 Family P10972_2-116 4.1e-23 1 No_clan T 1 115 0   
KOW Family P10972_45-76 0.000000038 1 CL0107 T 44 75 0   
Ribosomal_L24e Family P14116_5-57 5.1e-21 1 CL0175 U 4 56 0   
Ribosomal_L29 Family P10971_7-63 6.4e-20 1 CL0346 V 6 62 0   
Ribosomal_L31e Family P18138_8-85 0.0000000012 1 No_clan X 8 84 0   
Ribosomal_L32e Family P12736_126-231 4e-35 1 No_clan Y 125 230 0   
Ribosomal_L37ae Family P60619_11-82 1.3e-28 1 CL0167 Z 34 106 0   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit 1 1 56 0 -
Class: All alpha proteins
  Fold: Non-globular all-alpha subunits of globular proteins
    Superfamily: Ribosomal protein L39e
      Family: Ribosomal protein L39e
Ribosomal protein L39e 2 1 49 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit 3 1 92 0 -
Class: All beta proteins
  Fold: Reductase/isomerase/elongation factor common domain
    Superfamily: Translation proteins
      Family: Ribosomal protein L3
Ribosomal protein L3 B 1 337 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit D 10 174 09 -
Class: Alpha and beta proteins (a+b)
  Fold: Bacillus chorismate mutase-like
    Superfamily: L30e-like
      Family: L30e/L7ae ribosomal proteins
Ribosomal protein L7ae F 1 119 0 -
Class: Alpha and beta proteins (a+b)
  Fold: alpha/beta-Hammerhead
    Superfamily: Ribosomal protein L16p/L10e
      Family: Ribosomal protein L10e
Ribosomal protein L10e H 4 166 09 -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Ribosomal protein L11, C-terminal domain
      Family: Ribosomal protein L11, C-terminal domain
Ribosomal protein L11, C-terminal domain I 66 129 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit J 4 145 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit K 1 132 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit L 1 150 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit N 1 186 09 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit O 1 115 0 -
Class: All alpha proteins
  Fold: Ribosomal protein L19 (L19e)
    Superfamily: Ribosomal protein L19 (L19e)
      Family: Ribosomal protein L19 (L19e)
Ribosomal protein L19 (L19e) P 1 143 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit Q 1 95 09 -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal protein L22
    Superfamily: Ribosomal protein L22
      Family: Ribosomal protein L22
Ribosomal protein L22 R 1 150 0 -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal proteins S24e, L23 and L15e
    Superfamily: Ribosomal proteins S24e, L23 and L15e
      Family: L23p
Ribosomal protein L23 S 1 81 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit T 1 119 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit U 4 56 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit V 1 65 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit W 1 154 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit X 7 88 0 -
Class: Alpha and beta proteins (a/b)
  Fold: Barstar-like
    Superfamily: Ribosomal protein L32e
      Family: Ribosomal protein L32e
Ribosomal protein L32e Y 95 236 0 -
Class: Small proteins
  Fold: Rubredoxin-like
    Superfamily: Zn-binding ribosomal proteins
      Family: Ribosomal protein L37ae
Ribosomal protein L37ae Z 35 106 0 -
GO terms
Protein chains: GO type: GO description:
3=1-92 F tRNA binding
3=1-92 F metal ion binding
F=1-120 F RNA binding
G=1-348 P ribosome biogenesis
N=1-187 C ribosome
N=1-187 F 5S rRNA binding
N=1-187 F structural constituent of ribosome
N=1-187 P translation
W=1-154 C large ribosomal subunit
Y=1-241 F DNA binding
Y=1-241 F nucleotide binding
Y=1-241 F rRNA binding
Y=1-241 P DNA repair
Sequences
Download file with secondary structure created by Stride  
3ccs.pdb1.pdb:   [ download sequences in FASTA format ]
1 (protein): 
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2 (protein): 
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3 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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0 (rna): 
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9 (rna): 
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